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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0513000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.26 (0.0237) R2 : 0.122
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.397 (0.0499) R2dN8 : 0.157 R2N8 : 0.122
σ : 0.446
deviance : 91.36
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
67.34 0.386 3.29 -0.2 0.215 11.3 -0.121 -67.1 0.418 9.49 27.09 37 21.4 1.03
76.91 0.412 3.25 0.0735 0.215 2.51 -0.0976 -- 0.418 9.51 27.09 37 21.4 1.03
67.39 0.385 3.28 -0.192 0.215 10.4 -- -61.7 0.418 9.59 27.09 37 21.4 1.03
76.94 0.411 3.25 0.07 0.215 2.52 -- -- 0.418 9.59 27.09 37 21.4 1.03
70.11 0.392 3.29 -0.193 -- 10.3 -- -61.7 0.418 -- 27.09 37 21.4 1.03
89.29 0.443 3.25 0.0962 0.171 -- -0.202 -- 0.406 9.32 -- -- -- --
89.43 0.443 3.25 0.0893 0.171 -- -- -- 0.406 9.58 -- -- -- --
70.41 0.391 3.25 0.129 -- 4.95 -- -- 0.449 -- 28.1 182 20.9 2.5
77.07 0.411 3.25 -- 0.215 2.53 -- -- 0.41 9.56 26.57 30 21.5 0.719
91.16 0.446 3.26 0.088 -- -- -- -- 0.406 -- -- -- -- --
89.64 0.443 3.26 -- 0.171 -- -- -- 0.396 9.54 -- -- -- --
70.25 0.39 3.26 -- -- 4.6 -- -- 0.41 -- 28.07 169 20.9 3.49
91.36 0.446 3.26 -- -- -- -- -- 0.397 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 75.04 temperature 25.0 30 > th dose dependent rect. 21 1
3 78.66 humidity 60.0 270 < th dose independent rect. 18 1
4 78.69 humidity 60.0 270 < th dose dependent rect. 18 1
6 81.48 temperature 30.0 270 > th dose dependent rect. 18 1
22 81.77 humidity 90.0 10 < th dose dependent rect. 4 1
26 82.25 humidity 90.0 10 < th dose independent rect. 3 2
37 83.03 atmosphere 1005.0 10 > th dose dependent rect. 4 1
39 83.07 temperature 30.0 30 < th dose dependent rect. 4 1
40 83.08 wind 5.0 10 < th dose independent rect. 4 1
44 83.11 wind 7.0 10 < th dose dependent rect. 4 1
47 83.15 atmosphere 1005.0 10 > th dose independent rect. 4 1
49 83.17 temperature 10.0 10 > th dose independent rect. 4 1
51 83.17 temperature 30.0 10 < th dose independent rect. 4 1
52 83.17 humidity 50.0 10 > th dose independent rect. 4 1
56 83.17 atmosphere 995.0 10 > th dose independent rect. 4 1
57 83.17 atmosphere 1010.0 10 < th dose independent rect. 4 1
59 83.17 radiation 1.0 10 < th dose independent rect. 4 1
64 83.17 temperature 10.0 10 > th dose independent rect. 5 23
65 83.17 radiation 1.0 10 < th dose dependent rect. 4 1
71 83.19 precipitation 0.1 10 < th dose independent rect. 4 1
72 83.19 precipitation 0.1 10 < th dose dependent rect. 4 1
74 83.21 temperature 25.0 90 > th dose independent rect. 2 3
75 83.26 humidity 50.0 10 > th dose dependent rect. 4 1
81 83.29 wind 1.0 10 > th dose independent rect. 4 1
84 83.30 humidity 80.0 90 < th dose dependent rect. 20 1
104 83.31 atmosphere 1015.0 30 < th dose dependent rect. 4 1
119 83.34 temperature 10.0 10 > th dose dependent rect. 4 1
125 83.41 temperature 25.0 90 > th dose independent rect. 4 1
130 83.42 temperature 25.0 90 > th dose dependent rect. 3 1
140 83.46 wind 7.0 1440 < th dose independent rect. 5 1
142 83.46 temperature 10.0 1440 > th dose independent rect. 5 1
145 83.46 temperature 30.0 1440 < th dose independent rect. 5 1
149 83.46 humidity 50.0 1440 > th dose independent rect. 5 1
158 83.46 atmosphere 995.0 1440 > th dose independent rect. 5 1
159 83.46 atmosphere 1015.0 1440 < th dose independent rect. 5 1
160 83.46 radiation 20.0 1440 < th dose independent rect. 5 1
169 83.46 temperature 10.0 1440 > th dose independent rect. 6 23
183 83.53 wind 1.0 30 > th dose dependent rect. 4 1
197 83.81 humidity 80.0 90 < th dose independent rect. 20 1
198 83.81 atmosphere 995.0 10 > th dose independent rect. 5 23
206 83.99 temperature 25.0 30 > th dose independent rect. 21 1
210 84.08 precipitation 0.1 30 < th dose independent rect. 5 23
212 84.08 precipitation 0.1 30 < th dose dependent rect. 5 23
223 84.35 temperature 25.0 10 > th dose dependent rect. 21 8
224 84.39 wind 9.0 30 < th dose independent rect. 5 23
283 85.25 humidity 90.0 10 < th dose dependent rect. 21 1
303 85.63 humidity 90.0 10 < th dose independent rect. 21 1
327 85.83 humidity 50.0 30 > th dose independent rect. 5 23
334 85.89 humidity 80.0 90 < th dose independent rect. 20 14
336 85.92 humidity 70.0 270 < th dose independent rect. 19 12
354 85.98 radiation 1.0 10 < th dose dependent rect. 4 10
395 86.19 atmosphere 1005.0 270 > th dose dependent rect. 1 1
396 86.19 humidity 70.0 270 < th dose dependent rect. 19 12
409 86.21 radiation 1.0 10 < th dose independent rect. 4 10
417 86.28 wind 3.0 30 > th dose independent rect. 21 1
422 86.31 atmosphere 1005.0 30 > th dose independent rect. 21 1
457 86.45 radiation 1.0 90 > th dose independent rect. 15 23
496 86.61 temperature 30.0 270 > th dose independent rect. 18 1
523 86.64 radiation 1.0 90 < th dose dependent rect. 7 22
533 86.66 radiation 1.0 90 < th dose dependent rect. 12 17
536 86.66 radiation 1.0 30 < th dose dependent rect. 23 23
540 86.68 humidity 80.0 90 > th dose independent rect. 20 15
543 86.68 radiation 1.0 90 < th dose dependent rect. 17 23
558 86.71 humidity 90.0 270 < th dose independent rect. 1 4
559 86.71 radiation 1.0 90 < th dose independent rect. 9 20
564 86.72 radiation 1.0 90 < th dose independent rect. 12 17
584 86.73 humidity 80.0 14400 < th dose dependent rect. 5 4
635 86.80 radiation 1.0 90 < th dose dependent rect. 11 23
644 86.82 radiation 1.0 90 < th dose dependent no NA NA
657 86.83 humidity 80.0 270 < th dose dependent rect. 18 14
663 86.83 radiation 1.0 90 < th dose dependent rect. 1 23
669 86.85 humidity 90.0 270 < th dose independent rect. 1 1
678 86.87 radiation 1.0 30 < th dose dependent rect. 19 21
679 86.88 wind 9.0 1440 < th dose independent rect. 3 3
680 86.88 temperature 10.0 1440 > th dose independent rect. 3 3
683 86.88 temperature 30.0 1440 < th dose independent rect. 3 3
687 86.88 humidity 50.0 1440 > th dose independent rect. 3 3
696 86.88 atmosphere 995.0 1440 > th dose independent rect. 3 3
697 86.88 radiation 20.0 1440 < th dose independent rect. 3 3
707 86.88 temperature 10.0 1440 > th dose independent rect. 6 21
715 86.88 radiation 1.0 90 < th dose dependent rect. 15 23
718 86.89 temperature 30.0 30 < th dose independent rect. 5 23
739 86.92 radiation 1.0 30 < th dose dependent rect. 2 14
751 86.93 radiation 1.0 90 < th dose dependent rect. 21 23
752 86.94 humidity 90.0 720 > th dose independent rect. 2 1
782 86.96 humidity 70.0 14400 > th dose independent rect. 8 1
787 86.96 radiation 1.0 10 < th dose independent rect. 2 4
788 86.96 radiation 1.0 10 < th dose independent rect. 2 12
791 86.96 wind 7.0 10 > th dose dependent rect. 12 1
794 86.96 radiation 1.0 30 < th dose dependent rect. 2 12
807 86.99 radiation 1.0 30 < th dose independent rect. 23 23
815 87.00 wind 1.0 90 > th dose independent rect. 13 16
822 87.01 humidity 70.0 14400 > th dose independent rect. 24 9
825 87.01 radiation 1.0 10 < th dose independent rect. 19 21
827 87.01 radiation 1.0 30 < th dose dependent sin 3 NA
832 87.02 humidity 70.0 14400 > th dose independent rect. 6 3
833 87.02 humidity 70.0 14400 > th dose independent rect. 4 5
867 87.03 radiation 1.0 90 < th dose independent rect. 17 23
907 87.05 wind 1.0 30 > th dose dependent rect. 21 1
974 87.09 humidity 70.0 14400 < th dose independent rect. 8 1
975 87.09 radiation 1.0 10 < th dose independent rect. 2 10