BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0512100 Os11g0512100|J075062F07
         (142 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0512100  Conserved hypothetical protein                      266   4e-72
Os11g0512200  No apical meristem (NAM) protein domain contai...   102   7e-23
Os11g0512000  No apical meristem (NAM) protein domain contai...    75   2e-14
Os11g0512600                                                       69   1e-12

>Os11g0512100 Conserved hypothetical protein
          Length = 142

 Score =  266 bits (679), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 127/127 (100%), Positives = 127/127 (100%)

Query: 16  MLYIPWFLLKQHLVTYYMSTVLQENNGSPSAGQTHGPLEKTMVEPDSSLRICRIYKKRQR 75
           MLYIPWFLLKQHLVTYYMSTVLQENNGSPSAGQTHGPLEKTMVEPDSSLRICRIYKKRQR
Sbjct: 16  MLYIPWFLLKQHLVTYYMSTVLQENNGSPSAGQTHGPLEKTMVEPDSSLRICRIYKKRQR 75

Query: 76  TPQFIIPPSIGDARELILALPTIGNTREVALALPAIDFLGQPSFEEGSDVSADVITDDKD 135
           TPQFIIPPSIGDARELILALPTIGNTREVALALPAIDFLGQPSFEEGSDVSADVITDDKD
Sbjct: 76  TPQFIIPPSIGDARELILALPTIGNTREVALALPAIDFLGQPSFEEGSDVSADVITDDKD 135

Query: 136 GYGHGMN 142
           GYGHGMN
Sbjct: 136 GYGHGMN 142



>Os11g0512200 No apical meristem (NAM) protein domain containing protein
          Length = 243

 Score =  102 bits (255), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 50/82 (60%), Positives = 60/82 (73%), Gaps = 5/82 (6%)

Query: 24  LKQHLVTYYMSTVLQE-----NNGSPSAGQTHGPLEKTMVEPDSSLRICRIYKKRQRTPQ 78
           +K+ LV ++  +   E     NNGSPSA  TH PL +TMVEPD+S  ICRIYKKRQR PQ
Sbjct: 122 MKRTLVFHFRKSSSTERTGWKNNGSPSAAHTHAPLVETMVEPDNSWMICRIYKKRQRAPQ 181

Query: 79  FIIPPSIGDARELILALPTIGN 100
            IIPPSIG+ARE +LA+P IGN
Sbjct: 182 VIIPPSIGNAREAVLAVPAIGN 203



>Os11g0512000 No apical meristem (NAM) protein domain containing protein
          Length = 300

 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 62/113 (54%), Gaps = 22/113 (19%)

Query: 34  STVLQENNGSPS---AGQTHGPLEKTMVEPDSSLRICRIYKKRQRTPQFIIPPSIGDARE 90
           +T+ ++++G  +   A +   PL + MVEPDSS  IC IYKKRQR P  +IPP IGD  E
Sbjct: 176 ATIAKKSDGLSATLRAKRDSAPLMRIMVEPDSSWVICCIYKKRQRAPPVVIPPVIGDVGE 235

Query: 91  LILALPTIGNTREVALALPAIDFLGQP----------------SFEEGSDVSA 127
            I+    IG+ RE  L    IDFLGQP                S EEGSD SA
Sbjct: 236 AIIPH-AIGDAREGQLHF--IDFLGQPARNDPSSPHSCTIDPSSLEEGSDESA 285



>Os11g0512600 
          Length = 240

 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/99 (45%), Positives = 54/99 (54%), Gaps = 19/99 (19%)

Query: 52  PLEKTMVEPDSSLRICRIYKKRQRTPQFIIPPSIGDARELILALPTIGNTREVALALPAI 111
           PL +T+VEPD S  ICRIY+ RQR    I PP+I +ARE+I+  P  GN RE  +    I
Sbjct: 146 PLVETVVEPDGSWLICRIYRTRQRALPVITPPAIENAREIIIP-PANGNAREAQVRF--I 202

Query: 112 DFLGQ---------------PSFEEGSDVSADVITDDKD 135
           DFL Q               PS  EGSD SA  + D KD
Sbjct: 203 DFLQQGSHIESSSPCSCIVGPSLAEGSDESAGSV-DQKD 240



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,915,613
Number of extensions: 198546
Number of successful extensions: 364
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 360
Number of HSP's successfully gapped: 4
Length of query: 142
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 51
Effective length of database: 12,284,327
Effective search space: 626500677
Effective search space used: 626500677
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 151 (62.8 bits)