FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0512100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.05 (0.0254) R2 : 0.00278
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0602 (0.0534) R2dN8 : 0.00359 R2N8 : 0.00278
σ : 0.478
deviance : 104.9
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
99.68 0.469 3.07 0.25 0.0869 3.65 -0.426 11.7 0.0901 5.86 995 5632 -- --
103.54 0.474 3.08 0.14 0.0872 0.569 -0.213 -- 0.0688 4.02 995.1 2015 -- --
100.11 0.466 3.08 0.256 0.0855 3.89 -- 12.5 0.0926 5.34 995 6089 -- --
103.35 0.473 3.04 0.123 0.0835 0.461 -- -- 0.076 4.96 995.8 2440 -- --
100.48 0.467 3.08 0.285 -- 4.52 -- 14.7 0.0933 -- 994.9 5605 -- --
103.7 0.477 3.05 0.121 0.0885 -- -0.417 -- 0.0699 5.82 -- -- -- --
104.13 0.478 3.05 0.118 0.0864 -- -- -- 0.0715 5.52 -- -- -- --
101.83 0.47 3.04 0.117 -- 0.551 -- -- 0.0975 -- 997.5 5816 -- --
101.8 0.47 3.04 -- 0.0891 0.548 -- -- 0.0832 5.26 997.7 5824 -- --
104.51 0.478 3.05 0.12 -- -- -- -- 0.0736 -- -- -- -- --
104.49 0.478 3.05 -- 0.0883 -- -- -- 0.0584 5.46 -- -- -- --
102.19 0.471 3.04 -- -- 0.546 -- -- 0.0843 -- 997.6 5825 -- --
104.9 0.478 3.05 -- -- -- -- -- 0.0602 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 97.31 temperature 25.0 10 > th dose dependent rect. 24 1
2 97.61 humidity 90.0 10 < th dose independent rect. 24 1
4 97.75 atmosphere 995.0 4320 > th dose independent rect. 8 7
7 97.86 humidity 90.0 30 < th dose dependent rect. 24 1
8 97.99 atmosphere 995.0 4320 > th dose independent rect. 11 3
9 98.01 atmosphere 995.0 4320 > th dose independent rect. 4 10
12 98.09 temperature 25.0 10 > th dose independent rect. 24 1
13 98.09 atmosphere 995.0 4320 < th dose dependent rect. 14 1
40 98.24 atmosphere 995.0 4320 < th dose independent rect. 14 1
49 98.26 temperature 10.0 1440 > th dose independent rect. 1 1
52 98.26 temperature 30.0 1440 < th dose independent rect. 1 1
56 98.26 humidity 50.0 1440 > th dose independent rect. 1 1
66 98.26 atmosphere 995.0 1440 > th dose independent rect. 1 1
67 98.26 radiation 1.0 1440 < th dose independent rect. 1 1
87 98.26 temperature 10.0 1440 > th dose independent rect. 2 23
90 98.26 radiation 1.0 1440 < th dose dependent rect. 1 1
97 98.30 wind 1.0 30 > th dose dependent rect. 24 1
105 98.44 wind 1.0 30 > th dose independent rect. 24 1
116 98.46 atmosphere 1010.0 30 < th dose independent rect. 24 1
119 98.49 precipitation 0.1 4320 > th dose dependent rect. 20 1
120 98.50 atmosphere 995.0 4320 > th dose independent rect. 9 4
128 98.56 atmosphere 1005.0 30 > th dose independent rect. 24 1
130 98.59 atmosphere 995.0 4320 > th dose independent rect. 14 1
132 98.59 atmosphere 1015.0 30 < th dose dependent rect. 24 1
133 98.60 wind 7.0 30 < th dose independent rect. 24 1
136 98.60 temperature 30.0 30 < th dose independent rect. 24 1
137 98.60 humidity 50.0 30 > th dose independent rect. 24 1
140 98.60 atmosphere 995.0 30 > th dose independent rect. 24 1
141 98.60 radiation 1.0 30 < th dose independent rect. 24 1
146 98.60 precipitation 0.1 30 < th dose independent rect. 24 1
147 98.60 temperature 10.0 30 > th dose independent rect. 1 23
148 98.60 radiation 1.0 30 < th dose dependent rect. 24 1
153 98.60 precipitation 0.1 30 < th dose dependent rect. 24 1
165 98.64 radiation 1.0 4320 < th dose dependent rect. 23 1
172 98.72 radiation 40.0 270 > th dose independent rect. 15 1
189 98.72 radiation 40.0 270 > th dose dependent rect. 15 1
208 98.76 wind 7.0 1440 < th dose independent rect. 1 1
210 98.77 wind 9.0 30 < th dose dependent rect. 24 1
212 98.78 atmosphere 995.0 30 > th dose dependent rect. 24 1
220 98.84 humidity 50.0 30 > th dose dependent rect. 24 1
251 98.97 wind 1.0 270 < th dose independent rect. 14 1
254 99.00 wind 9.0 30 < th dose independent rect. 1 23
256 99.04 temperature 25.0 90 > th dose independent rect. 24 3
257 99.04 wind 1.0 270 < th dose dependent rect. 14 1
291 99.10 temperature 25.0 270 > th dose dependent rect. 23 1
296 99.15 atmosphere 1005.0 30 > th dose dependent rect. 24 3
314 99.30 atmosphere 1000.0 30 > th dose independent rect. 3 23
322 99.38 radiation 1.0 4320 < th dose dependent rect. 3 1
327 99.45 radiation 1.0 43200 < th dose dependent rect. 3 1
330 99.48 temperature 25.0 30 > th dose independent rect. 8 1
336 99.50 temperature 10.0 1440 > th dose independent rect. 9 1
339 99.50 atmosphere 995.0 1440 > th dose independent rect. 9 1
342 99.50 atmosphere 1015.0 1440 < th dose independent rect. 9 1
343 99.50 temperature 10.0 1440 > th dose independent rect. 10 23
346 99.50 temperature 25.0 30 > th dose dependent rect. 8 1
363 99.58 humidity 80.0 30 < th dose independent rect. 8 1
364 99.59 atmosphere 995.0 4320 > th dose independent rect. 9 12
370 99.61 atmosphere 995.0 4320 > th dose independent rect. 12 9
372 99.62 wind 5.0 30 < th dose independent rect. 8 1
374 99.62 atmosphere 1005.0 30 > th dose independent rect. 8 1
375 99.62 radiation 10.0 30 > th dose independent rect. 8 1
376 99.62 atmosphere 1005.0 30 > th dose dependent rect. 8 1
378 99.63 wind 1.0 30 > th dose independent rect. 8 1
386 99.65 humidity 90.0 30 < th dose dependent rect. 8 1
388 99.67 humidity 70.0 30 > th dose independent rect. 8 1
392 99.67 radiation 1.0 30 > th dose dependent rect. 8 1
395 99.68 radiation 30.0 30 < th dose independent rect. 8 1
400 99.69 temperature 10.0 30 > th dose independent rect. 8 1
402 99.69 temperature 30.0 30 < th dose independent rect. 8 1
403 99.69 humidity 50.0 30 > th dose independent rect. 8 1
406 99.69 atmosphere 1010.0 30 < th dose independent rect. 8 1
410 99.69 precipitation 0.1 30 < th dose independent rect. 8 1
411 99.69 temperature 10.0 30 > th dose independent rect. 9 23
412 99.69 precipitation 0.1 30 < th dose dependent rect. 8 1
416 99.70 wind 1.0 30 > th dose dependent rect. 8 1
417 99.70 wind 9.0 30 < th dose dependent rect. 8 1
426 99.75 temperature 30.0 30 < th dose dependent rect. 24 1
432 99.77 humidity 50.0 30 > th dose dependent rect. 8 1
466 99.78 radiation 40.0 30 < th dose dependent rect. 8 1
477 99.81 wind 9.0 1440 < th dose independent rect. 3 1
478 99.81 temperature 10.0 1440 > th dose independent rect. 3 1
481 99.81 temperature 30.0 1440 < th dose independent rect. 3 1
485 99.81 humidity 50.0 1440 > th dose independent rect. 3 1
494 99.81 atmosphere 995.0 1440 > th dose independent rect. 3 1
495 99.81 radiation 1.0 1440 < th dose independent rect. 3 1
515 99.81 temperature 10.0 1440 > th dose independent rect. 4 23
536 99.86 atmosphere 1005.0 30 > th dose dependent rect. 2 1
537 99.87 atmosphere 1005.0 30 > th dose independent rect. 2 1
541 99.88 wind 3.0 30 < th dose independent rect. 2 1
545 99.88 wind 5.0 30 < th dose dependent rect. 2 1
555 99.90 temperature 10.0 30 > th dose independent rect. 2 1
557 99.90 temperature 30.0 30 < th dose independent rect. 2 1
558 99.90 humidity 50.0 30 > th dose independent rect. 2 1
565 99.90 atmosphere 1010.0 30 < th dose independent rect. 2 1
567 99.90 radiation 1.0 30 < th dose independent rect. 2 1
572 99.90 precipitation 0.1 30 < th dose independent rect. 2 1
574 99.90 temperature 10.0 30 > th dose independent rect. 3 23
576 99.90 humidity 50.0 30 > th dose dependent rect. 2 1
580 99.90 radiation 1.0 30 < th dose dependent rect. 2 1
586 99.90 precipitation 0.1 30 < th dose dependent rect. 2 1
591 99.92 atmosphere 1015.0 30 < th dose dependent rect. 8 1
592 99.95 atmosphere 1015.0 30 < th dose dependent rect. 2 1
594 99.96 precipitation 0.1 30 < th dose independent rect. 3 23
595 99.96 precipitation 0.1 30 < th dose dependent rect. 3 23
597 99.98 wind 1.0 30 > th dose independent rect. 2 1
603 99.99 temperature 30.0 30 < th dose dependent rect. 2 1
704 100.21 wind 1.0 720 < th dose dependent rect. 12 1
714 100.22 radiation 1.0 4320 < th dose dependent rect. 19 6
717 100.23 atmosphere 995.0 4320 > th dose independent rect. 14 7
733 100.28 atmosphere 995.0 4320 > th dose independent rect. 19 20
755 100.35 precipitation 0.1 4320 > th dose independent rect. 20 1
762 100.37 atmosphere 1000.0 30 > th dose independent rect. 3 21
764 100.38 wind 7.0 4320 > th dose independent rect. 6 1
765 100.38 precipitation 0.1 4320 < th dose independent rect. 20 1
767 100.38 precipitation 0.1 4320 < th dose dependent rect. 20 1
786 100.40 wind 7.0 4320 > th dose dependent rect. 6 1
791 100.43 temperature 20.0 90 > th dose dependent rect. 3 4
792 100.44 temperature 20.0 90 > th dose independent rect. 3 4
796 100.45 wind 3.0 30 < th dose dependent rect. 24 3
799 100.46 temperature 30.0 30 < th dose dependent rect. 8 1
810 100.49 atmosphere 995.0 4320 > th dose independent sin 6 NA
814 100.49 wind 9.0 30 < th dose independent rect. 3 23
844 100.58 wind 9.0 30 < th dose independent rect. 9 23
845 100.59 wind 1.0 720 < th dose independent rect. 12 1
856 100.63 wind 3.0 30 < th dose independent rect. 24 3
862 100.65 temperature 25.0 10 > th dose independent rect. 17 1
869 100.69 humidity 90.0 270 < th dose independent rect. 22 11
870 100.69 atmosphere 995.0 4320 < th dose dependent sin 4 NA
875 100.70 atmosphere 1005.0 270 > th dose dependent rect. 24 1
880 100.71 wind 7.0 4320 < th dose independent rect. 5 2
888 100.73 wind 1.0 720 > th dose independent rect. 9 6
889 100.74 humidity 90.0 90 < th dose independent rect. 23 4
895 100.75 atmosphere 995.0 4320 < th dose independent sin 6 NA
897 100.76 humidity 90.0 270 < th dose independent rect. 23 2
902 100.77 humidity 50.0 30 > th dose independent rect. 3 23
903 100.77 atmosphere 1000.0 30 > th dose independent rect. 9 23
958 100.83 atmosphere 1005.0 30 > th dose independent rect. 24 3
975 100.87 radiation 1.0 4320 < th dose dependent rect. 19 8
983 100.91 atmosphere 1000.0 10 < th dose independent rect. 10 2
984 100.91 precipitation 0.1 30 < th dose independent rect. 9 23
986 100.91 precipitation 0.1 30 < th dose dependent rect. 9 23
995 100.94 radiation 20.0 720 > th dose independent rect. 15 1