BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0490300 Os11g0490300|Os11g0490300
         (248 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0490300  Conserved hypothetical protein                      214   6e-56
Os02g0507600  Conserved hypothetical protein                       72   3e-13

>Os11g0490300 Conserved hypothetical protein
          Length = 248

 Score =  214 bits (544), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 122/248 (49%), Positives = 122/248 (49%)

Query: 1   MGKGKVHPSPSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGKEVLAYLVLASMRSSS 60
           MGKGKVHPSPSP                              EGKEVLAYLVLASMRSSS
Sbjct: 1   MGKGKVHPSPSPAAGAGEETAEAVLMRLLPAAVVAMAAGLGAEGKEVLAYLVLASMRSSS 60

Query: 61  AARWGQAEVXXXXXXXXXXXXXHHAPELGCGCFGCYTAYWSRWDGSPERDRDAIHRAIEA 120
           AARWGQAEV             HHAPELGCGCFGCYTAYWSRWDGSPERDRDAIHRAIEA
Sbjct: 61  AARWGQAEVGKGGGGGGSGRVGHHAPELGCGCFGCYTAYWSRWDGSPERDRDAIHRAIEA 120

Query: 121 FEDHLSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQEETSXX 180
           FEDHLSR                                             NQEETS  
Sbjct: 121 FEDHLSRKEEEEVVGGGKGASSRRRKKRSGKDKAKAKVPPAASAGQPPPPPPNQEETSAA 180

Query: 181 XXXXSPPKSILDGXXXXXXXMKNTXXXXXXXXXXXXXXXXXXXXXXXXXLSWKVCSSANA 240
               SPPKSILDG       MKNT                         LSWKVCSSANA
Sbjct: 181 AAAASPPKSILDGEEEEEEEMKNTAAAAVAGAGDGGVVEEERRRRGWGVLSWKVCSSANA 240

Query: 241 GFGLCGGC 248
           GFGLCGGC
Sbjct: 241 GFGLCGGC 248



>Os02g0507600 Conserved hypothetical protein
          Length = 268

 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 49/84 (58%), Gaps = 3/84 (3%)

Query: 43  EGKEVLAYLVLASMRSSSAARWGQAE-VXXXXXXXXXXXXXHHAPELGCGCFGCYTAYWS 101
           E ++VLAYLV   ++ + AA   + E                H P +GCGCF CYT++WS
Sbjct: 48  EDQQVLAYLVTRCLQGAGAAHHPEREHPPARGGGGGRRRRGAHPPAIGCGCFDCYTSFWS 107

Query: 102 RWDGSPERDRDAIHRAIEAFEDHL 125
           RWD SP   R+ IH AIEAFEDHL
Sbjct: 108 RWDCSPS--RELIHDAIEAFEDHL 129



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.132    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,855,405
Number of extensions: 103946
Number of successful extensions: 156
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 3
Length of query: 248
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 150
Effective length of database: 11,918,829
Effective search space: 1787824350
Effective search space used: 1787824350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)