Os11g0490300 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0490300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	2.86	(0.0409)	R²	:	0.184
β₁	:	0.721	(0.177)	R²_dD	:	0.0692	R²_D	:	-0.163
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	-16.2	(2.82)	R²_dE	:	3.53	R²_E	:	-4.77
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	99.4	(14.7)	R²_dD*E	:	4.95	R²_D*E	:	-3.33
γ₁	:	0.05	(0.069)	R²_dN8	:	0.00126	R²_N8	:	-0.0648
σ	:	0.604
deviance	:	167.96
__

_____

C
peak time of C	:	--
E
wheather	:	atmosphere
threshold	:	999.8
memory length	:	100
response mode	:	< th
dose dependency	:	dose independent
G
type of G	:	rect.
peak or start time of G	:	11.4
open length of G	:	2.8

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
166.3	0.606	2.85	0.757	0.0952	-15.9	-0.598	97.2	0.0502	8.83	999.7	100	11.3	2.94
187.27	0.642	3.03	-0.147	0.0922	1.47	-0.607	--	0.0512	8.67	999.7	100	11.3	2.94
167.39	0.603	2.86	0.72	0.0996	-16.2	--	99.1	0.0499	9.41	999.8	100	11.4	2.83
183.29	0.631	3.03	-0.16	0.109	2.56	--	--	0.0454	8.57	999.9	121	11.2	2.47
167.96	0.604	2.86	0.721	--	-16.2	--	99.4	0.05	--	999.8	100	11.4	2.8
203.64	0.669	3.03	-0.0793	0.157	--	-0.311	--	0.0281	10.1	--	--	--	--
203.91	0.669	3.03	-0.0897	0.161	--	--	--	0.0286	11.2	--	--	--	--
183.79	0.631	3.03	-0.169	--	2.55	--	--	0.0521	--	999.9	119	11.2	2.39
184	0.632	3.02	--	0.0917	2.56	--	--	0.0633	9.13	999.9	127	11.1	2.53
205.53	0.67	3.03	-0.0936	--	--	--	--	0.0271	--	--	--	--	--
204.12	0.668	3.03	--	0.162	--	--	--	0.0386	11.3	--	--	--	--
184.54	0.633	3.02	--	--	2.54	--	--	0.0702	--	999.9	120	11.2	2.41
205.77	0.67	3.03	--	--	--	--	--	0.0375	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	168.88	atmosphere	1000	90	< th	dose independent	rect.	11	3
3	171.70	atmosphere	1000	10	< th	dose independent	rect.	12	2
12	174.30	atmosphere	1000	90	< th	dose independent	rect.	12	1
15	174.61	atmosphere	1000	10	< th	dose dependent	rect.	12	2
21	175.36	atmosphere	1000	90	< th	dose dependent	rect.	12	1
34	175.89	wind	1	10	< th	dose independent	rect.	13	1
36	175.89	wind	1	10	< th	dose dependent	rect.	13	1
52	178.97	radiation	40	10	> th	dose dependent	rect.	14	1
112	181.62	atmosphere	1000	30	< th	dose independent	rect.	11	11
223	184.39	atmosphere	1000	30	> th	dose independent	sin	22	NA
225	184.44	atmosphere	1000	30	< th	dose independent	sin	22	NA
249	185.03	radiation	40	10	> th	dose independent	rect.	14	1
588	187.48	atmosphere	1000	10	< th	dose dependent	rect.	12	10
594	187.52	atmosphere	1000	10	< th	dose dependent	rect.	12	8
707	188.49	atmosphere	1000	30	< th	dose independent	rect.	17	22
711	188.51	atmosphere	1000	30	< th	dose independent	rect.	19	20
737	188.61	atmosphere	1000	10	< th	dose dependent	sin	22	NA
738	188.64	atmosphere	995	4320	> th	dose independent	rect.	6	8
742	188.76	atmosphere	995	4320	> th	dose independent	rect.	9	5
783	189.16	atmosphere	995	4320	> th	dose independent	rect.	2	12
827	189.64	atmosphere	995	4320	< th	dose dependent	rect.	14	1
869	189.84	atmosphere	995	4320	< th	dose independent	rect.	14	1
914	190.08	atmosphere	1000	10	< th	dose dependent	rect.	22	17
917	190.09	atmosphere	1000	10	< th	dose dependent	rect.	20	19
941	190.17	atmosphere	1000	10	< th	dose dependent	rect.	18	21
942	190.18	atmosphere	995	4320	> th	dose independent	rect.	12	4