BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0490300 Os11g0490300|Os11g0490300
         (248 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G24270.1  | chr1:8608123-8608743 REVERSE LENGTH=207             74   7e-14
AT1G62422.1  | chr1:23100419-23100985 REVERSE LENGTH=189           69   3e-12
AT1G12020.1  | chr1:4062625-4063305 REVERSE LENGTH=227             62   2e-10
AT5G13090.1  | chr5:4153758-4154567 REVERSE LENGTH=270             59   3e-09

>AT1G24270.1 | chr1:8608123-8608743 REVERSE LENGTH=207
          Length = 206

 Score = 73.9 bits (180), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 48/85 (56%), Gaps = 15/85 (17%)

Query: 43  EGKEVLAYLVLASMRSSSAARWGQAEVXXXXXXXXXXXXXHHAPELGCGCFGCYTAYWSR 102
           E  EVLAYL+  S+ +++     +                H AP L C CF CYT+YWS+
Sbjct: 101 EDLEVLAYLITRSLNTTNVVSCKKKR-------------SHKAPLLDCQCFDCYTSYWSK 147

Query: 103 WDGSPERDRDAIHRAIEAFEDHLSR 127
           WD S   +R+ I++ IEAFEDHL+R
Sbjct: 148 WDSSS--NRELINQIIEAFEDHLTR 170



>AT1G62422.1 | chr1:23100419-23100985 REVERSE LENGTH=189
          Length = 188

 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 52/123 (42%), Gaps = 18/123 (14%)

Query: 3   KGKVHPSPSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGKEVLAYLVLASMRSSSAA 62
           KG VHPSP P                              E +EVLAYL+  S  S+  +
Sbjct: 7   KGTVHPSPPPAIKTDEQFLSLLPVAILSLVAALSV-----EDREVLAYLISNSGDSNRIS 61

Query: 63  RWGQAEVXXXXXXXXXXXXXHHAPELGCGCFGCYTAYWSRWDGSPERDRDAIHRAIEAFE 122
           R  + +              HH+P   C CF CYT+YW RWD SP   R  IH  I+A+E
Sbjct: 62  RLKKNK-----------EDNHHSPLFLCDCFSCYTSYWVRWDTSPR--RQLIHEIIDAYE 108

Query: 123 DHL 125
           D L
Sbjct: 109 DSL 111



>AT1G12020.1 | chr1:4062625-4063305 REVERSE LENGTH=227
          Length = 226

 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 43/83 (51%), Gaps = 5/83 (6%)

Query: 43  EGKEVLAYLVLASMRSSSAARWGQAEVXXXXXXXXXXXXXHHAPELGCGCFGCYTAYWSR 102
           E +EVLAYL+  S  S S  R   + +             +H+P   C CF CYT+YW R
Sbjct: 41  EDREVLAYLI--STASYSGERNPTSRLNKTKAHKKALFD-NHSPLFHCDCFSCYTSYWVR 97

Query: 103 WDGSPERDRDAIHRAIEAFEDHL 125
           WD SP   R  IH  I+AFED L
Sbjct: 98  WDSSPS--RQLIHEIIDAFEDSL 118



>AT5G13090.1 | chr5:4153758-4154567 REVERSE LENGTH=270
          Length = 269

 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 42/82 (51%), Gaps = 4/82 (4%)

Query: 43  EGKEVLAYLVLASMRSSSAARWGQAEVXXXXXXXXXXXXXHHAPELGCGCFGCYTAYWSR 102
           E +EVLAYL+  +  ++ + R   +               H  P   C CF CYT YW R
Sbjct: 57  EEREVLAYLI--TRGTTISDRGNSSSKNKTKKKSNKSSKNHKPPVFDCECFDCYTNYWFR 114

Query: 103 WDGSPERDRDAIHRAIEAFEDH 124
           WD SP  +R+ IH  IEAFE+H
Sbjct: 115 WDSSP--NRELIHEIIEAFENH 134



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.132    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,893,010
Number of extensions: 56992
Number of successful extensions: 80
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 4
Length of query: 248
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 152
Effective length of database: 8,474,633
Effective search space: 1288144216
Effective search space used: 1288144216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 110 (47.0 bits)