BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0479000 Os11g0479000|AK107976
         (131 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0479000  Conserved hypothetical protein                      268   7e-73
Os12g0464600                                                      102   7e-23
Os12g0465100  Glycosyl transferase, family 31 protein             101   1e-22
Os12g0465000                                                       99   1e-21
Os11g0523200                                                       68   2e-12

>Os11g0479000 Conserved hypothetical protein
          Length = 131

 Score =  268 bits (685), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 131/131 (100%), Positives = 131/131 (100%)

Query: 1   MATPLNLLIALLFIVVSVQGTNGADRCAASSSIDVQTINTGEAAAGGGDTVFEVQVKNLC 60
           MATPLNLLIALLFIVVSVQGTNGADRCAASSSIDVQTINTGEAAAGGGDTVFEVQVKNLC
Sbjct: 1   MATPLNLLIALLFIVVSVQGTNGADRCAASSSIDVQTINTGEAAAGGGDTVFEVQVKNLC 60

Query: 61  GCSVRDVRLDGGGFATTVEVDPAVFRAADDGGDYYLVNGGGPIASMATVSFRYTWDHFFQ 120
           GCSVRDVRLDGGGFATTVEVDPAVFRAADDGGDYYLVNGGGPIASMATVSFRYTWDHFFQ
Sbjct: 61  GCSVRDVRLDGGGFATTVEVDPAVFRAADDGGDYYLVNGGGPIASMATVSFRYTWDHFFQ 120

Query: 121 ITPRSMEEDQC 131
           ITPRSMEEDQC
Sbjct: 121 ITPRSMEEDQC 131



>Os12g0464600 
          Length = 129

 Score =  102 bits (254), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 54/125 (43%), Positives = 77/125 (61%), Gaps = 5/125 (4%)

Query: 5   LNLLIALLFIVVSVQGTNGADRCAASSSIDVQTINTGEAAAGGGDTVFEVQVKNLCGCSV 64
           L +   +L ++++VQG   + RC   SSID+Q  NTG+   G  DT+F+V V N C C+V
Sbjct: 9   LMIPFTILMLLMAVQGAE-SQRCT-PSSIDIQQTNTGKKV-GALDTMFQVSVTNRCTCTV 65

Query: 65  RDVRLDGGGFATTVEVDPAVFRAADDGGDYYLVNGGGPIASMATVSFRYTWDHFFQITPR 124
           R V L   GF + V VDP +FR A   G  YLV  G  I S  +V+F+Y WDH+F++TP 
Sbjct: 66  RTVFLRADGFTSAVAVDPKLFRQAGSAG--YLVGDGRRIPSAKSVTFQYAWDHYFKMTPA 123

Query: 125 SMEED 129
           S++ +
Sbjct: 124 SIQAE 128



>Os12g0465100 Glycosyl transferase, family 31 protein
          Length = 126

 Score =  101 bits (252), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 55/127 (43%), Positives = 77/127 (60%), Gaps = 4/127 (3%)

Query: 1   MATPLNLLIALLFIVVSVQGTNGADRCAASSSIDVQTINTGEAAAGGGDTVFEVQVKNLC 60
           M T  NL+  L+ ++VS+  + G  +    SSIDVQ +NTG+   G  DTVF V V+N C
Sbjct: 1   MHTQTNLMF-LIAVIVSLMLSQGESQPCGPSSIDVQQMNTGKKV-GTLDTVFRVTVENRC 58

Query: 61  GCSVRDVRLDGGGFATTVEVDPAVFRAADDGGDYYLVNGGGPIASMATVSFRYTWDHFFQ 120
            C+V+ V +   GF +++ VDP +FR A D    Y+V  G  IAS  +V F Y W H+FQ
Sbjct: 59  VCTVKAVVVQANGFTSSIPVDPRLFRKAGDTS--YVVGDGQQIASTNSVMFEYAWSHYFQ 116

Query: 121 ITPRSME 127
           ITP S++
Sbjct: 117 ITPASVQ 123



>Os12g0465000 
          Length = 127

 Score = 98.6 bits (244), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/129 (41%), Positives = 77/129 (59%), Gaps = 3/129 (2%)

Query: 1   MATPLNLLIALLFIVVSVQGTNGADRCAASSSIDVQTINTGEAAAGGGDTVFEVQVKNLC 60
           MA    +L + + I+V +    G  +  A SSIDV   NTG+   G  DTVF+V V N C
Sbjct: 1   MALKRLVLPSFVVIIVLLMAVQGESQRCALSSIDVSQTNTGKKV-GTLDTVFQVMVINRC 59

Query: 61  GCSVRDVRLDGGGFATTVEVDPAVFRAADDGGDYYLVNGGGPIASMATVSFRYTWDHFFQ 120
            C+VR + L   GFA++V ++P +FR A   G  YL+  G  I S  +++F+Y WDH+FQ
Sbjct: 60  QCAVRAIFLRADGFASSVTINPKLFRQAGAVG--YLIGDGRRIPSGESIAFQYAWDHYFQ 117

Query: 121 ITPRSMEED 129
           +TP S++ D
Sbjct: 118 MTPASVQAD 126



>Os11g0523200 
          Length = 125

 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 59/119 (49%), Gaps = 4/119 (3%)

Query: 7   LLIALLFIVVSVQGTNGADRCAASSSIDVQTINTGEAAAGGGDTVFEVQVKNLCGCSVRD 66
           L++ L  ++ S+     A  C+  + +  QT   G A    G   + V V N+CGC    
Sbjct: 6   LMVFLACLLSSINNRGEAASCSLENIVVKQTATGGWAH---GQPEYAVTVSNMCGCPQSG 62

Query: 67  VRLDGGGFATTVEVDPAVFRAADDGGDYYLVNGGGPIASMATVSFRYTWDHFFQITPRS 125
           V++   GF TT+ VDPA  R A  GG+  LVN G P+     ++F Y W   F+ TP S
Sbjct: 63  VQVACDGFDTTLAVDPAKLRPA-AGGNLCLVNSGDPVVQGHDITFSYAWSSQFKFTPVS 120



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,323,780
Number of extensions: 244310
Number of successful extensions: 626
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 622
Number of HSP's successfully gapped: 6
Length of query: 131
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 42
Effective length of database: 12,388,755
Effective search space: 520327710
Effective search space used: 520327710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 150 (62.4 bits)