Os11g0479000 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0479000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	5.89	(0.0589)	R²	:	0.753
β₁	:	1.78	(0.289)	R²_dD	:	0.048	R²_D	:	0.0265
β₂	:	1.08	(0.131)	R²_dC	:	0.037	R²_C	:	-0.028
β₃	:	-5.64	(0.21)	R²_dE	:	0.55	R²_E	:	0.633
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	-3.75	(0.791)	R²_dD*E	:	0.0282	R²_D*E	:	-0.144
γ₁	:	1.24	(0.136)	R²_dN8	:	0.09	R²_N8	:	0.182
σ	:	0.978
deviance	:	440.99
__

_____

C
peak time of C	:	15.1
E
wheather	:	temperature
threshold	:	25.32
memory length	:	1400
response mode	:	< th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	18
open length of G	:	12

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
435.73	0.981	5.88	1.8	1.03	-5.73	1.32	-4.08	1.25	14.8	25.32	1414	18	11.9
461.24	1	5.96	0.839	1.38	-5.74	1.12	--	1.16	14.4	38.62	1402	18.1	12.1
440.99	0.978	5.89	1.78	1.08	-5.64	--	-3.75	1.24	15.1	25.32	1400	18	12
466.63	1.01	5.95	0.879	1.37	-5.76	--	--	1.17	14.6	36.98	1403	18.1	12.2
463.39	1	5.83	1.77	--	-6.71	--	-4.34	1.36	--	37.52	1525	19.2	12.3
1150.23	1.59	5.64	2.71	0.64	--	1.44	--	2.56	14.5	--	--	--	--
1156.53	1.59	5.64	2.75	0.674	--	--	--	2.57	15.3	--	--	--	--
478.19	1.02	5.95	0.873	--	-6.45	--	--	1.15	--	59.18	1471	19.8	12
484.01	1.02	6	--	1.35	-6.02	--	--	0.991	14.6	41.39	1415	18.2	12
1182.16	1.61	5.64	2.72	--	--	--	--	2.55	--	--	--	--	--
1355.57	1.72	5.71	--	0.619	--	--	--	2.26	15.3	--	--	--	--
495.29	1.04	5.95	--	--	-6.71	--	--	1.06	--	62.5	1467	19.9	12
1377.25	1.73	5.71	--	--	--	--	--	2.25	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	437.86	temperature	25	1440	< th	dose dependent	rect.	18	12
5	438.94	temperature	25	1440	< th	dose dependent	rect.	20	6
36	446.34	temperature	25	1440	< th	dose dependent	sin	13	NA
37	446.48	temperature	20	1440	> th	dose dependent	rect.	20	10
54	448.61	temperature	25	1440	< th	dose dependent	rect.	21	2
277	464.36	temperature	25	1440	< th	dose dependent	rect.	4	1
287	465.54	temperature	15	1440	> th	dose dependent	rect.	4	1
307	466.92	temperature	20	1440	> th	dose dependent	rect.	21	1
325	467.82	temperature	20	1440	> th	dose dependent	sin	11	NA
765	485.66	temperature	25	1440	< th	dose dependent	no	NA	NA
774	485.85	temperature	20	4320	> th	dose independent	rect.	21	3
867	489.19	temperature	25	1440	< th	dose dependent	rect.	24	23
877	489.63	temperature	25	1440	< th	dose dependent	rect.	3	23
895	490.37	temperature	20	4320	> th	dose independent	rect.	22	1