BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0479000 Os11g0479000|AK107976
         (131 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G05835.1  | chr1:1762248-1762702 FORWARD LENGTH=128             51   2e-07

>AT1G05835.1 | chr1:1762248-1762702 FORWARD LENGTH=128
          Length = 127

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 52  FEVQVKNLCG-CSVRDVRLDGGGFATTVEVDPAVFRAADDGGDYYLVNGGGPIASMATVS 110
           F V+V N C  C + ++RL   GF  ++ VDP   R         +VN G P++ M T+S
Sbjct: 48  FRVEVMNKCPMCPIINLRLKCQGFPQSL-VDPTFLRVLSSSAGNCVVNDGLPLSPMQTLS 106

Query: 111 FRYTWDHFFQITPRS 125
           F Y+  H F + P S
Sbjct: 107 FNYSNTHQFALRPLS 121



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,958,503
Number of extensions: 118757
Number of successful extensions: 200
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 1
Length of query: 131
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 44
Effective length of database: 8,721,377
Effective search space: 383740588
Effective search space used: 383740588
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 106 (45.4 bits)