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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0465100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glycosyl transferase, family 31 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.96 (0.0138) R2 : 0.000224
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00926 (0.029) R2dN8 : 0.000289 R2N8 : 0.000224
σ : 0.259
deviance : 30.9
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
29.47 0.255 2.95 0.115 0.0723 -0.0437 0.163 1.66 0.0245 10 0.7641 27 -- --
30.08 0.255 2.96 0.0884 0.0669 0.168 0.123 -- 0.0264 9.97 0.7978 30 -- --
29.56 0.253 2.95 0.121 0.0734 -0.045 -- 1.61 0.0237 9.52 0.7746 26 -- --
30.14 0.256 2.96 0.0941 0.0663 0.166 -- -- 0.0263 10 0.7735 30 -- --
29.88 0.255 2.95 0.12 -- -0.0311 -- 1.54 0.0246 -- 0.8 26 -- --
30.28 0.258 2.96 0.101 0.0705 -- 0.116 -- 0.0204 9.28 -- -- -- --
30.33 0.258 2.96 0.105 0.0706 -- -- -- 0.0204 9.08 -- -- -- --
30.4 0.257 2.96 0.093 -- 0.168 -- -- 0.0263 -- 0.7305 30 -- --
30.37 0.257 2.96 -- 0.0665 0.188 -- -- 0.0184 10 0.709 30 -- --
30.61 0.259 2.96 0.104 -- -- -- -- 0.0208 -- -- -- -- --
30.62 0.259 2.96 -- 0.0707 -- -- -- 0.00879 8.96 -- -- -- --
30.63 0.258 2.96 -- -- 0.19 -- -- 0.0168 -- 0.7999 30 -- --
30.9 0.259 2.96 -- -- -- -- -- 0.00926 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 26.38 wind 1.0 10 < th dose independent rect. 14 4
13 26.41 wind 1.0 10 < th dose dependent rect. 14 4
25 26.46 wind 1.0 10 < th dose independent rect. 14 2
29 26.46 wind 1.0 10 < th dose dependent rect. 14 2
41 26.48 wind 1.0 90 < th dose dependent rect. 13 2
85 26.57 wind 1.0 10 < th dose dependent rect. 9 9
96 26.60 wind 1.0 10 < th dose dependent rect. 9 7
155 26.77 wind 1.0 10 < th dose independent rect. 9 9
170 26.80 wind 1.0 10 < th dose dependent rect. 6 12
175 26.83 wind 1.0 10 < th dose dependent rect. 6 10
177 26.85 wind 1.0 10 < th dose independent rect. 9 7
202 26.89 temperature 25.0 30 > th dose dependent rect. 6 1
204 26.90 atmosphere 1010.0 30 < th dose independent rect. 6 1
221 26.95 wind 1.0 10 < th dose independent rect. 6 12
225 26.96 radiation 10.0 30 < th dose independent rect. 6 1
241 27.02 wind 1.0 10 < th dose independent rect. 6 10
300 27.26 wind 1.0 10 < th dose independent sin 21 NA
321 27.38 wind 1.0 10 > th dose independent sin 21 NA
324 27.43 atmosphere 1010.0 30 < th dose dependent rect. 6 1
357 27.57 wind 1.0 30 < th dose dependent sin 22 NA
366 27.60 wind 1.0 30 < th dose independent rect. 6 1
429 27.77 wind 1.0 30 > th dose dependent rect. 6 1
459 27.93 humidity 90.0 30 < th dose dependent rect. 6 1
488 28.15 radiation 20.0 30 < th dose dependent rect. 6 1
491 28.16 temperature 25.0 10 > th dose dependent rect. 2 5
500 28.19 radiation 1.0 10 > th dose dependent rect. 6 1
507 28.23 wind 3.0 30 > th dose independent rect. 6 1
517 28.29 temperature 25.0 30 > th dose independent rect. 6 1
607 28.55 atmosphere 1005.0 10 > th dose independent rect. 6 1
610 28.55 radiation 1.0 30 > th dose independent rect. 6 1
614 28.56 wind 5.0 30 < th dose independent rect. 6 1
617 28.56 temperature 10.0 30 > th dose independent rect. 6 1
619 28.56 temperature 30.0 30 < th dose independent rect. 6 1
620 28.56 humidity 50.0 30 > th dose independent rect. 6 1
628 28.56 precipitation 0.1 30 < th dose independent rect. 6 1
629 28.56 temperature 10.0 30 > th dose independent rect. 7 23
630 28.56 precipitation 0.1 30 < th dose dependent rect. 6 1
659 28.60 humidity 90.0 30 < th dose independent rect. 6 1
660 28.61 wind 9.0 1440 < th dose independent rect. 7 1
661 28.61 temperature 10.0 1440 > th dose independent rect. 7 1
665 28.61 temperature 30.0 1440 < th dose independent rect. 7 1
669 28.61 humidity 50.0 1440 > th dose independent rect. 7 1
675 28.61 atmosphere 995.0 1440 > th dose independent rect. 7 1
676 28.61 atmosphere 1015.0 1440 < th dose independent rect. 7 1
678 28.61 temperature 10.0 1440 > th dose independent rect. 8 23
710 28.66 humidity 50.0 30 > th dose dependent rect. 6 1
716 28.69 wind 9.0 30 < th dose dependent rect. 6 1
742 28.79 atmosphere 995.0 30 > th dose dependent rect. 6 1
772 28.87 wind 9.0 30 < th dose independent rect. 7 23
798 28.93 wind 1.0 90 > th dose independent rect. 9 12
845 29.02 wind 1.0 10 > th dose independent rect. 10 12
878 29.10 wind 1.0 10 > th dose independent rect. 8 13
884 29.12 temperature 30.0 30 < th dose dependent rect. 6 1
904 29.17 radiation 10.0 43200 < th dose dependent rect. 23 1
916 29.19 radiation 1.0 4320 < th dose dependent rect. 23 1
921 29.20 wind 1.0 30 < th dose dependent rect. 6 1
953 29.26 atmosphere 995.0 30 > th dose independent rect. 7 23