BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0473200 Os11g0473200|AK106730
         (382 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0473200  Similar to Ubiquitin carboxyl-terminal hydrola...   638   0.0  
Os10g0160000  Similar to Ubiquitin carboxyl-terminal hydrola...   199   4e-51

>Os11g0473200 Similar to Ubiquitin carboxyl-terminal hydrolase 12 (EC 3.1.2.15)
           (Ubiquitin thiolesterase 12) (Ubiquitin-specific
           processing protease 12) (Deubiquitinating enzyme 12)
          Length = 382

 Score =  638 bits (1645), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/361 (86%), Positives = 312/361 (86%)

Query: 22  RALIRDITVAAEAHAKEGDTFFLITHRWWQSWIDYVIQDLAXXXXXXXXXXXXXXXVLRR 81
           RALIRDITVAAEAHAKEGDTFFLITHRWWQSWIDYVIQDLA               VLRR
Sbjct: 22  RALIRDITVAAEAHAKEGDTFFLITHRWWQSWIDYVIQDLANSTNNGSHHHEHGSNVLRR 81

Query: 82  PGAIDNTDLIDDTASEVSNMEIELHDTLVEGRDYILLPQQVWEKLHGWYGGGPTLPRKAI 141
           PGAIDNTDLIDDTASEVSNMEIELHDTLVEGRDYILLPQQVWEKLHGWYGGGPTLPRKAI
Sbjct: 82  PGAIDNTDLIDDTASEVSNMEIELHDTLVEGRDYILLPQQVWEKLHGWYGGGPTLPRKAI 141

Query: 142 NTGLSQTDLAIEVYPLRLQLLLAPKGEQAVIRISKKDTVGELHKKACEVFDLIPDEVCIW 201
           NTGLSQTDLAIEVYPLRLQLLLAPKGEQAVIRISKKDTVGELHKKACEVFDLIPDEVCIW
Sbjct: 142 NTGLSQTDLAIEVYPLRLQLLLAPKGEQAVIRISKKDTVGELHKKACEVFDLIPDEVCIW 201

Query: 202 DYYGRTRHSLMDNLEKTLDDANIQMDQDILVEVTTDANGSLDGGCIGSIQENEYLEREST 261
           DYYGRTRHSLMDNLEKTLDDANIQMDQDILVEVTTDANGSLDGGCIGSIQENEYLEREST
Sbjct: 202 DYYGRTRHSLMDNLEKTLDDANIQMDQDILVEVTTDANGSLDGGCIGSIQENEYLEREST 261

Query: 262 SLIADASKSGLSNENFAXXXXXXXXXXXXXXXXXXXXXXNGDLDNMHGTSAMITRGSPXX 321
           SLIADASKSGLSNENFA                      NGDLDNMHGTSAMITRGSP  
Sbjct: 262 SLIADASKSGLSNENFASNNYTSRSYSSSLTQSQYLRSSNGDLDNMHGTSAMITRGSPLG 321

Query: 322 XXXXXXXXXXCFMNSAIQCLVHTPEFARYFREDYHREINWQNPLGMVVSTLSTSMALKPY 381
                     CFMNSAIQCLVHTPEFARYFREDYHREINWQNPLGMVVSTLSTSMALKPY
Sbjct: 322 LTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDYHREINWQNPLGMVVSTLSTSMALKPY 381

Query: 382 V 382
           V
Sbjct: 382 V 382



>Os10g0160000 Similar to Ubiquitin carboxyl-terminal hydrolase 12 (EC 3.1.2.15)
           (Ubiquitin thiolesterase 12) (Ubiquitin-specific
           processing protease 12) (Deubiquitinating enzyme 12)
          Length = 931

 Score =  199 bits (505), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 122/355 (34%), Positives = 178/355 (50%), Gaps = 32/355 (9%)

Query: 22  RALIRDITVAAEAHAKEGDTFFLITHRWWQSWIDYVIQDLAXXXXXXXXXXXXXXXVLRR 81
           R L+  +T  AE + K+GD  +L++H WW +W  YV                       R
Sbjct: 24  RDLVVALTREAEENVKDGDLRYLVSHSWWLNWQSYV-----GLIKPDENDADMLPQAPSR 78

Query: 82  PGAIDNTDLIDDTASEVSNMEIELHDTLVEGRDYILLPQQVWEKLHGWYGGGPTLPRKAI 141
           PG IDN+ L+ + +S + + E EL  TL EG DY L+PQ+VW KLH WY GGP L R+ I
Sbjct: 79  PGEIDNSKLVSEESSSIGD-EPELQRTLREGDDYALVPQEVWRKLHEWYKGGPELSRRVI 137

Query: 142 NTGLSQTDLAIEVYPLRLQLLLAPKGEQAVIRISKKDTVGELHKKACEVFDLIPDEVCIW 201
            +  +     ++VYPLRL+L       + +IRIS+K  V EL+   C +  +   ++ IW
Sbjct: 138 CSSPTSRSYIVDVYPLRLKLFDGRDSLERIIRISRKAKVSELYSLVCSLLSVEQSKIDIW 197

Query: 202 DYYGRTRHSLMDNLEKTLDDANIQMDQDILVEVTTDANGSLDGGC--IGSIQENEY---- 255
           D+Y +T+   + NL +T+++A + MDQ+I++E   D     D  C  +G+   NE     
Sbjct: 198 DFYQKTKGKKLINLNETVEEAQLMMDQEIIIEAKAD-----DAWCSDLGTRSNNELALIP 252

Query: 256 LERESTSLI---ADASKSGLSNENFAXXXXXXXXXXXXXXXXXXXXXXNGDLDNMHGTSA 312
           LE  ++S       A  +G S+   +                      NG  D++HG S 
Sbjct: 253 LEPSTSSFSIAGGPAFSNGFSSGFGSSFSQDNSFSPLLRDAEDGYSFSNGTKDDIHGLSG 312

Query: 313 MITRGSPXXXXXXXXXXXXCFMNSAIQCLVHTPEFARYFREDYHREINWQNPLGM 367
           +   G+             CFMNSAIQ LVHTP    YF +DY REIN +NPLG+
Sbjct: 313 LHNLGN------------TCFMNSAIQSLVHTPPLVEYFLQDYSREINTENPLGL 355



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.135    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,718,880
Number of extensions: 393417
Number of successful extensions: 856
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 853
Number of HSP's successfully gapped: 2
Length of query: 382
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 279
Effective length of database: 11,657,759
Effective search space: 3252514761
Effective search space used: 3252514761
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)