FiT-DB / Search/ Help/ Sample detail

Os11g0473200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Ubiquitin carboxyl-terminal hydrolase 12 (EC 3.1.2.15) (Ubiquitin thiolesterase 12) (Ubiquitin-specific processing protease 12) (Deubiquitinating enzyme 12).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.22 (0.0159) R2 : 0.622
β1 : 1.57 (0.0608) R2dD : 0.639 R2D : 0.365
β2 : -- (--) R2dC : -- R2C : --
β3 : -0.889 (0.0545) R2dE : 0.264 R2E : -0.00558
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.212 (0.0356) R2dN8 : 0.0443 R2N8 : -0.0736
σ : 0.294
deviance : 39.81
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 20.97
memory length : 2185
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
34.69 0.277 8.16 1.98 0.335 -0.857 0.213 1.54 0.321 9.55 21.46 1613 -- --
36.16 0.28 8.2 1.65 0.355 -0.778 0.189 -- 0.275 8.97 20.36 7137 -- --
34.85 0.275 8.16 1.99 0.329 -0.862 -- 1.57 0.321 9.62 21.62 1639 -- --
36.14 0.28 8.2 1.62 0.35 -0.736 -- -- 0.267 9.03 21.34 7221 -- --
37.87 0.287 8.16 2.05 -- -0.992 -- 1.74 0.341 -- 21.8 2182 -- --
54.98 0.348 8.25 1.24 0.364 -- 0.2 -- 0.0163 9.49 -- -- -- --
55.13 0.348 8.25 1.25 0.363 -- -- -- 0.0165 9.46 -- -- -- --
39.81 0.294 8.22 1.57 -- -0.889 -- -- 0.212 -- 20.97 2185 -- --
89.67 0.441 8.3 -- 0.367 -0.347 -- -- -0.177 8.89 30.01 5777 -- --
62.88 0.371 8.26 1.25 -- -- -- -- 0.0176 -- -- -- -- --
96.37 0.459 8.29 -- 0.363 -- -- -- -0.123 9.2 -- -- -- --
93.56 0.45 8.28 -- -- -0.597 -- -- -0.0375 -- 21.9 717 -- --
104 0.476 8.3 -- -- -- -- -- -0.121 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 33.09 wind 7 43200 > th dose dependent rect. 19 20
8 33.38 wind 9 43200 < th dose independent rect. 18 21
11 33.51 wind 7 43200 > th dose dependent rect. 24 15
12 33.52 wind 7 43200 > th dose dependent rect. 5 10
15 33.52 wind 7 43200 > th dose dependent rect. 2 13
22 33.58 wind 9 43200 > th dose independent rect. 17 22
30 33.67 temperature 20 720 > th dose dependent rect. 17 20
44 33.73 wind 9 43200 > th dose independent rect. 19 20
45 33.73 wind 5 43200 > th dose dependent sin 2 NA
55 33.77 wind 7 43200 > th dose dependent rect. 24 21
57 33.78 wind 7 43200 > th dose dependent rect. 2 19
64 33.82 radiation 1 14400 > th dose independent rect. 18 12
66 33.82 wind 7 43200 > th dose dependent rect. 5 16
75 33.86 radiation 1 14400 > th dose independent rect. 5 1
79 33.88 radiation 1 14400 < th dose independent rect. 5 1
98 33.93 wind 7 43200 > th dose dependent rect. 9 5
110 33.96 wind 9 43200 > th dose dependent rect. 19 11
115 33.98 wind 7 43200 > th dose dependent rect. 5 22
119 33.99 wind 7 43200 > th dose dependent rect. 5 20
121 34.00 wind 7 43200 > th dose dependent rect. 2 23
134 34.03 wind 7 43200 > th dose dependent no NA NA
171 34.08 wind 7 43200 > th dose dependent rect. 13 23
175 34.11 radiation 1 14400 < th dose independent rect. 18 12
195 34.17 wind 9 43200 > th dose dependent rect. 19 6
203 34.19 wind 5 43200 > th dose independent rect. 5 11
213 34.20 wind 9 43200 > th dose dependent rect. 19 8
225 34.22 wind 7 43200 > th dose dependent rect. 10 23
238 34.25 wind 5 43200 < th dose independent rect. 5 11
239 34.25 wind 7 43200 < th dose independent rect. 23 17
246 34.26 wind 7 43200 > th dose independent sin 4 NA
252 34.27 wind 7 43200 > th dose independent rect. 23 17
292 34.32 temperature 20 1440 > th dose dependent rect. 6 3
298 34.33 wind 7 43200 < th dose independent sin 4 NA
299 34.33 wind 5 43200 < th dose independent rect. 2 15
300 34.33 temperature 20 1440 > th dose dependent rect. 7 1
359 34.41 radiation 1 14400 < th dose independent rect. 21 9
369 34.42 radiation 1 14400 < th dose independent rect. 23 7
386 34.43 wind 5 43200 > th dose independent sin 2 NA
391 34.43 wind 9 43200 < th dose independent rect. 23 22
396 34.44 wind 5 43200 < th dose independent sin 2 NA
431 34.46 wind 9 43200 < th dose independent rect. 2 19
452 34.49 wind 9 43200 < th dose independent rect. 13 22
479 34.52 wind 1 43200 > th dose dependent rect. 9 1
510 34.56 temperature 20 1440 > th dose dependent rect. 18 1
570 34.66 wind 9 43200 > th dose dependent sin 13 NA
571 34.66 wind 9 43200 > th dose dependent rect. 10 13
575 34.67 wind 9 43200 > th dose independent rect. 24 21
577 34.67 wind 9 43200 < th dose independent rect. 2 23
580 34.67 wind 9 43200 > th dose dependent rect. 10 20
587 34.68 temperature 20 1440 > th dose dependent rect. 17 3
588 34.68 wind 9 43200 > th dose dependent rect. 10 15
596 34.69 wind 9 43200 > th dose independent rect. 19 12
603 34.69 wind 9 43200 > th dose dependent rect. 10 17
606 34.70 wind 9 43200 < th dose independent no NA NA
613 34.70 wind 9 43200 < th dose independent rect. 5 23
620 34.71 wind 9 43200 > th dose independent rect. 2 19
640 34.73 wind 9 43200 > th dose independent rect. 19 6
652 34.73 wind 9 43200 > th dose independent rect. 13 23
653 34.73 wind 9 43200 < th dose dependent rect. 8 6
655 34.73 wind 9 43200 > th dose dependent rect. 10 11
667 34.74 wind 1 43200 > th dose dependent rect. 9 3
686 34.76 wind 7 43200 > th dose independent rect. 10 1
688 34.76 wind 9 43200 > th dose independent rect. 5 16
691 34.76 wind 5 43200 > th dose independent rect. 24 21
698 34.76 wind 9 43200 < th dose dependent rect. 9 1
707 34.77 radiation 1 14400 > th dose independent rect. 17 2
733 34.78 wind 9 43200 > th dose dependent sin 17 NA
738 34.79 wind 9 43200 > th dose independent rect. 19 8
753 34.79 wind 9 43200 > th dose dependent rect. 13 19
803 34.83 wind 9 43200 > th dose dependent rect. 17 14
818 34.85 wind 5 43200 < th dose independent rect. 24 21
829 34.86 wind 9 43200 > th dose independent rect. 2 23
842 34.87 wind 9 43200 > th dose independent rect. 7 21
844 34.87 wind 9 43200 > th dose independent rect. 5 22
848 34.87 wind 9 43200 < th dose dependent rect. 9 3
852 34.88 radiation 30 14400 > th dose independent rect. 16 16
856 34.88 wind 9 43200 > th dose independent rect. 7 23
864 34.89 wind 9 43200 > th dose independent rect. 5 20
874 34.90 wind 9 43200 > th dose independent no NA NA
876 34.90 wind 7 43200 > th dose independent rect. 6 6
883 34.90 wind 5 43200 < th dose independent rect. 2 20
885 34.90 wind 5 43200 > th dose independent rect. 5 22
897 34.91 wind 9 43200 > th dose independent rect. 7 18
907 34.91 wind 5 43200 > th dose independent rect. 14 23
956 34.94 wind 5 43200 > th dose independent no NA NA
967 34.94 wind 5 43200 < th dose independent rect. 14 23