BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0471300 Os11g0471300|AK065835
(105 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0471300 Conserved hypothetical protein 216 4e-57
Os01g0541400 97 3e-21
Os03g0834800 89 5e-19
Os12g0125600 89 5e-19
Os11g0457000 UDP-glucuronosyl/UDP-glucosyltransferase famil... 85 9e-18
Os06g0345000 84 2e-17
Os03g0233600 77 4e-15
Os01g0658200 65 1e-11
>Os11g0471300 Conserved hypothetical protein
Length = 105
Score = 216 bits (549), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 105/105 (100%), Positives = 105/105 (100%)
Query: 1 YSICLCSFPNRSCLLEVTKADGGNGYKIPHMGKERLERLDILPNTLSCGFELYDKIPAVP 60
YSICLCSFPNRSCLLEVTKADGGNGYKIPHMGKERLERLDILPNTLSCGFELYDKIPAVP
Sbjct: 1 YSICLCSFPNRSCLLEVTKADGGNGYKIPHMGKERLERLDILPNTLSCGFELYDKIPAVP 60
Query: 61 TLQFILKWSPRSRQLKSKAIHTYIIDYIEPICKNPCFSLKIALLL 105
TLQFILKWSPRSRQLKSKAIHTYIIDYIEPICKNPCFSLKIALLL
Sbjct: 61 TLQFILKWSPRSRQLKSKAIHTYIIDYIEPICKNPCFSLKIALLL 105
>Os01g0541400
Length = 327
Score = 97.1 bits (240), Expect = 3e-21, Method: Composition-based stats.
Identities = 42/46 (91%), Positives = 44/46 (95%)
Query: 11 RSCLLEVTKADGGNGYKIPHMGKERLERLDILPNTLSCGFELYDKI 56
+SCLLEV KADGGNGYKIPHMGKERLERLDILPNTLSC FELYDK+
Sbjct: 273 QSCLLEVMKADGGNGYKIPHMGKERLERLDILPNTLSCDFELYDKV 318
>Os03g0834800
Length = 271
Score = 89.4 bits (220), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 39/46 (84%), Positives = 44/46 (95%)
Query: 11 RSCLLEVTKADGGNGYKIPHMGKERLERLDILPNTLSCGFELYDKI 56
+SCLLEV +ADGGNGY+IPHMGKERLERLDILPNTLSCG ELY+K+
Sbjct: 217 QSCLLEVMEADGGNGYRIPHMGKERLERLDILPNTLSCGRELYEKV 262
>Os12g0125600
Length = 271
Score = 89.4 bits (220), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 39/46 (84%), Positives = 44/46 (95%)
Query: 11 RSCLLEVTKADGGNGYKIPHMGKERLERLDILPNTLSCGFELYDKI 56
+SCLLEV +ADGGNGY+IPHMGKERLERLDILPNTLSCG ELY+K+
Sbjct: 217 QSCLLEVMEADGGNGYRIPHMGKERLERLDILPNTLSCGRELYEKV 262
>Os11g0457000 UDP-glucuronosyl/UDP-glucosyltransferase family protein
Length = 375
Score = 85.1 bits (209), Expect = 9e-18, Method: Composition-based stats.
Identities = 36/41 (87%), Positives = 40/41 (97%)
Query: 16 EVTKADGGNGYKIPHMGKERLERLDILPNTLSCGFELYDKI 56
EV KA+GGNGY+IPHMGKERLERLDILPNTLSCGFELY+K+
Sbjct: 313 EVMKANGGNGYEIPHMGKERLERLDILPNTLSCGFELYNKL 353
>Os06g0345000
Length = 385
Score = 84.3 bits (207), Expect = 2e-17, Method: Composition-based stats.
Identities = 37/40 (92%), Positives = 37/40 (92%)
Query: 16 EVTKADGGNGYKIPHMGKERLERLDILPNTLSCGFELYDK 55
EV KADGGNGYKIPHMGKE LERLDILPNTLSC FELYDK
Sbjct: 248 EVMKADGGNGYKIPHMGKESLERLDILPNTLSCDFELYDK 287
>Os03g0233600
Length = 334
Score = 76.6 bits (187), Expect = 4e-15, Method: Composition-based stats.
Identities = 30/46 (65%), Positives = 39/46 (84%)
Query: 11 RSCLLEVTKADGGNGYKIPHMGKERLERLDILPNTLSCGFELYDKI 56
++C +EV KADGGNGYKIPHM K+RLERLD+LP +L+C LY+K+
Sbjct: 283 QACFIEVMKADGGNGYKIPHMNKDRLERLDMLPTSLTCDIALYNKV 328
>Os01g0658200
Length = 479
Score = 65.1 bits (157), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/46 (58%), Positives = 35/46 (76%)
Query: 11 RSCLLEVTKADGGNGYKIPHMGKERLERLDILPNTLSCGFELYDKI 56
+SC +EV +A+GGN YKIPHM KERLE L +LP LSC LY+++
Sbjct: 428 QSCYIEVMRANGGNRYKIPHMNKERLEALGVLPKALSCDRGLYERV 473
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.143 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,975,596
Number of extensions: 146936
Number of successful extensions: 341
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 341
Number of HSP's successfully gapped: 9
Length of query: 105
Length of database: 17,035,801
Length adjustment: 73
Effective length of query: 32
Effective length of database: 13,224,179
Effective search space: 423173728
Effective search space used: 423173728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)