BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0454200 Os11g0454200|AK063517
         (164 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0454200  Dehydrin RAB 16B                                    152   1e-37
Os11g0454000  Dehydrin RAB 16C                                    115   2e-26

>Os11g0454200 Dehydrin RAB 16B
          Length = 164

 Score =  152 bits (383), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 90/164 (54%), Positives = 90/164 (54%)

Query: 1   MDNYQGQHGYGADRVDVYGNPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQFQPARE 60
           MDNYQGQHGYGADRVDVYGNPV                               QFQPARE
Sbjct: 1   MDNYQGQHGYGADRVDVYGNPVGAGQYGGGATAPGGGHGAMGMGGHAGAGAGGQFQPARE 60

Query: 61  DHKTGGILHRXXXXXXXXXXEDDGMGXXXXXXXXXXXXXXLPXXXXXXXXXXXXXXXXXX 120
           DHKTGGILHR          EDDGMG              LP                  
Sbjct: 61  DHKTGGILHRSGSSSSSSSSEDDGMGGRRKKGIKEKIKEKLPGGNKGNNHQQQQMMGNTG 120

Query: 121 XAYGQQGHAGMTGAGTGVHGAEYGNAGEKKGFMDKIKEKLPGQH 164
            AYGQQGHAGMTGAGTGVHGAEYGNAGEKKGFMDKIKEKLPGQH
Sbjct: 121 GAYGQQGHAGMTGAGTGVHGAEYGNAGEKKGFMDKIKEKLPGQH 164



>Os11g0454000 Dehydrin RAB 16C
          Length = 164

 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/166 (51%), Positives = 88/166 (53%), Gaps = 4/166 (2%)

Query: 1   MDNYQGQHGYGADRVDVYGNPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQFQPARE 60
           M+NYQGQHGYGADRVDVYGNPV                               QFQP +E
Sbjct: 1   MENYQGQHGYGADRVDVYGNPVAGQYGGGATAPGGGHGVMGMGGHHAGAGG--QFQPVKE 58

Query: 61  DHKTGGILHRXXXXXXXXXXEDDGMGXXXXXXXXXXXXXXLPXXXXXXXXXXXXXXXXXX 120
           +HKTGGILHR          EDDGMG              LP                  
Sbjct: 59  EHKTGGILHRSGSSSSSSSSEDDGMGGRRKKGIKEKIKEKLPGGNKGNNQQQQQMMGNTG 118

Query: 121 XAYGQQGHAGMTGAGTG--VHGAEYGNAGEKKGFMDKIKEKLPGQH 164
            AYGQQGHAGMTGAGTG  VHGAEYGN GEKKGFMDKIKEKLPGQH
Sbjct: 119 GAYGQQGHAGMTGAGTGTGVHGAEYGNTGEKKGFMDKIKEKLPGQH 164



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.139    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,770,096
Number of extensions: 84017
Number of successful extensions: 325
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 311
Number of HSP's successfully gapped: 6
Length of query: 164
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 71
Effective length of database: 12,179,899
Effective search space: 864772829
Effective search space used: 864772829
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 152 (63.2 bits)