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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0454200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Dehydrin RAB 16B.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.45 (0.0409) R2 : 0.213
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.16 (0.11) R2dE : 0.197 R2E : 0.155
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.439 (0.0868) R2dN8 : 0.0582 R2N8 : 0.0163
σ : 0.766
deviance : 270.27
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 28.4
memory length : 1219
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
260.53 0.758 3.56 -1.12 0.0803 1.57 0.989 -2.81 0.177 5.39 27.1 1217 -- --
261.98 0.754 3.49 -0.525 0.0911 1.3 1 -- 0.29 6.06 27.08 1221 -- --
262.6 0.755 3.56 -1.19 0.129 1.67 -- -3.02 0.141 8.07 26.84 1193 -- --
263.83 0.757 3.48 -0.51 0.126 1.34 -- -- 0.268 8.4 26.76 1188 -- --
263.33 0.756 3.56 -1.15 -- 1.59 -- -2.88 0.164 -- 27.04 1224 -- --
329.73 0.851 3.48 -0.102 0.214 -- 1.12 -- 0.287 3.89 -- -- -- --
333.16 0.855 3.48 -0.118 0.225 -- -- -- 0.281 2.74 -- -- -- --
264.43 0.757 3.48 -0.498 -- 1.29 -- -- 0.289 -- 27.1 1224 -- --
269.86 0.765 3.46 -- 0.106 1.19 -- -- 0.399 8.21 27.9 1190 -- --
336.09 0.857 3.48 -0.109 -- -- -- -- 0.287 -- -- -- -- --
333.52 0.854 3.48 -- 0.222 -- -- -- 0.294 2.73 -- -- -- --
270.27 0.766 3.45 -- -- 1.16 -- -- 0.439 -- 28.4 1219 -- --
336.4 0.856 3.48 -- -- -- -- -- 0.299 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 257.81 temperature 25 720 > th dose dependent rect. 17 7
3 258.34 humidity 70 720 < th dose independent rect. 18 14
5 258.62 temperature 25 720 > th dose dependent rect. 17 15
8 258.92 humidity 80 720 < th dose dependent rect. 18 3
18 259.90 humidity 70 720 < th dose independent rect. 18 2
43 261.50 humidity 70 720 > th dose independent sin 12 NA
63 262.10 humidity 70 720 > th dose independent rect. 18 8
81 262.69 temperature 30 1440 > th dose dependent rect. 15 1
82 262.71 temperature 30 1440 > th dose dependent rect. 14 5
116 262.96 temperature 30 1440 > th dose dependent sin 13 NA
145 263.73 humidity 60 1440 < th dose dependent rect. 15 19
147 263.76 humidity 70 1440 < th dose dependent sin 12 NA
155 264.09 humidity 70 720 > th dose independent rect. 16 16
158 264.21 humidity 60 1440 < th dose independent sin 12 NA
173 264.53 humidity 70 1440 < th dose dependent rect. 18 14
243 265.45 humidity 60 1440 < th dose dependent rect. 15 4
308 265.83 temperature 30 1440 > th dose independent rect. 17 2
333 265.97 humidity 70 1440 > th dose independent rect. 18 2
337 265.99 temperature 30 1440 < th dose independent sin 13 NA
374 266.14 temperature 30 1440 > th dose independent sin 13 NA
379 266.18 humidity 60 1440 < th dose independent rect. 14 19
402 266.30 temperature 30 1440 < th dose independent rect. 18 2
408 266.36 temperature 30 1440 < th dose independent rect. 17 11
431 266.42 temperature 30 1440 < th dose independent rect. 17 8
460 266.51 temperature 30 1440 < th dose independent rect. 17 14
471 266.58 humidity 60 1440 < th dose independent rect. 14 5
476 266.60 temperature 30 1440 > th dose dependent no NA NA
651 266.89 humidity 60 1440 > th dose independent rect. 14 5
699 266.98 humidity 60 1440 > th dose independent rect. 14 14
721 267.01 humidity 60 1440 > th dose independent rect. 14 11
742 267.11 temperature 30 1440 > th dose dependent rect. 17 23
756 267.22 temperature 30 1440 > th dose independent rect. 15 4
835 267.56 temperature 30 1440 < th dose independent rect. 15 13
840 267.58 temperature 30 1440 < th dose independent rect. 15 10
845 267.60 temperature 30 1440 < th dose independent rect. 15 4
858 267.64 temperature 30 1440 < th dose independent rect. 15 16