BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0433500 Os11g0433500|AK067849
         (351 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0433500  Similar to Protein transport protein Sec23A (S...   705   0.0  
Os08g0474700  Similar to COPII subunit Sec23 (Fragment)           493   e-140
Os03g0742800  Similar to Auxin-responsive protein IAA14 (Ind...   345   2e-95

>Os11g0433500 Similar to Protein transport protein Sec23A (SEC23-related protein
           A)
          Length = 351

 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/351 (96%), Positives = 339/351 (96%)

Query: 1   IKVQGIIGPCTSLEKKGALCADTVVGQGNTTAWKMCGLDRNTSLTVFFDVSPSERSSQPG 60
           IKVQGIIGPCTSLEKKGALCADTVVGQGNTTAWKMCGLDRNTSLTVFFDVSPSERSSQPG
Sbjct: 1   IKVQGIIGPCTSLEKKGALCADTVVGQGNTTAWKMCGLDRNTSLTVFFDVSPSERSSQPG 60

Query: 61  HQNPDLYIQFVTSYQHPEGQMRIRVTTICRKWVDGSTNTEELVEGFDQETAAVVLARYIS 120
           HQNPDLYIQFVTSYQHPEGQMRIRVTTICRKWVDGSTNTEELVEGFDQETAAVVLARYIS
Sbjct: 61  HQNPDLYIQFVTSYQHPEGQMRIRVTTICRKWVDGSTNTEELVEGFDQETAAVVLARYIS 120

Query: 121 LKMEMEEEFDATRWLDRSLIRLCSRFGDYRKDDPXXXXXXXXXXXXPQFMFNLRRSQFVQ 180
           LKMEMEEEFDATRWLDRSLIRLCSRFGDYRKDDP            PQFMFNLRRSQFVQ
Sbjct: 121 LKMEMEEEFDATRWLDRSLIRLCSRFGDYRKDDPSSFSLHSNFSLFPQFMFNLRRSQFVQ 180

Query: 181 VFNNSPDETAYFRMLLNRESITNSVAMIQPSLISFSFDLPPSPVFLDVASIAADRILLLD 240
           VFNNSPDETAYFRMLLNRESITNSVAMIQPSLISFSFDLPPSPVFLDVASIAADRILLLD
Sbjct: 181 VFNNSPDETAYFRMLLNRESITNSVAMIQPSLISFSFDLPPSPVFLDVASIAADRILLLD 240

Query: 241 AYFSVVIFHGMTIAQWRNMGYQNQPEHQQFAQLLQAPHEEAQIIIKGRFPAPRLVVCDQH 300
           AYFSVVIFHGMTIAQWRNMGYQNQPEHQQFAQLLQAPHEEAQIIIKGRFPAPRLVVCDQH
Sbjct: 241 AYFSVVIFHGMTIAQWRNMGYQNQPEHQQFAQLLQAPHEEAQIIIKGRFPAPRLVVCDQH 300

Query: 301 GSQARFLLAKLNPSATYNSAHDVPPGSDIIFTDDVSFQVFCEHLQRLAVQS 351
           GSQARFLLAKLNPSATYNSAHDVPPGSDIIFTDDVSFQVFCEHLQRLAVQS
Sbjct: 301 GSQARFLLAKLNPSATYNSAHDVPPGSDIIFTDDVSFQVFCEHLQRLAVQS 351



>Os08g0474700 Similar to COPII subunit Sec23 (Fragment)
          Length = 763

 Score =  493 bits (1269), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 233/354 (65%), Positives = 277/354 (78%), Gaps = 7/354 (1%)

Query: 1   IKVQGIIGPCTSLEKKGALCADTVVGQGNTTAWKMCGLDRNTSLTVFFDVS----PSERS 56
           +K+QGIIGPCTSLEKK  L +DTVVGQG+T+AWKMCGLDR TS+ + FD++    P   S
Sbjct: 413 VKIQGIIGPCTSLEKKSPLSSDTVVGQGSTSAWKMCGLDRKTSICLVFDIAKKDGPDAIS 472

Query: 57  SQPGHQNPDLYIQFVTSYQHPEGQMRIRVTTICRKWVDGSTNTEELVEGFDQETAAVVLA 116
               +Q    Y QF+T YQH EGQMR+R TT+ R+WV GS   ++L++GFDQE AA V+A
Sbjct: 473 QSTSNQ---FYFQFLTYYQHHEGQMRLRATTLSRRWVAGSGGVQDLIDGFDQEAAAAVMA 529

Query: 117 RYISLKMEMEEEFDATRWLDRSLIRLCSRFGDYRKDDPXXXXXXXXXXXXPQFMFNLRRS 176
           R +S KME E +FD  RWLDR+LI +CS+FGDY+K+ P            PQFMFNLRRS
Sbjct: 530 RLVSFKMEAEADFDPIRWLDRALISMCSKFGDYQKETPSSFSLSPRLSIFPQFMFNLRRS 589

Query: 177 QFVQVFNNSPDETAYFRMLLNRESITNSVAMIQPSLISFSFDLPPSPVFLDVASIAADRI 236
           QFVQVFNNSPDETAYFRM+LNRE++ N+V MIQPSLIS+SF   P PV LDV +IAADRI
Sbjct: 590 QFVQVFNNSPDETAYFRMMLNRENVANAVVMIQPSLISYSFQSGPEPVLLDVTAIAADRI 649

Query: 237 LLLDAYFSVVIFHGMTIAQWRNMGYQNQPEHQQFAQLLQAPHEEAQIIIKGRFPAPRLVV 296
           LLLD+YF++VIFHG+TIAQWR  GYQ+Q  H+ FAQLL+AP EE   IIK RFP PRLVV
Sbjct: 650 LLLDSYFTIVIFHGITIAQWRKAGYQDQQGHEAFAQLLKAPREETDSIIKERFPVPRLVV 709

Query: 297 CDQHGSQARFLLAKLNPSATYNSAHDVPPGSDIIFTDDVSFQVFCEHLQRLAVQ 350
           CDQ+GSQARFLLAKLNPS TYNS +  PPG D+IFTDDVSF+VF +HLQRLAVQ
Sbjct: 710 CDQYGSQARFLLAKLNPSVTYNSDNPPPPGGDVIFTDDVSFEVFMDHLQRLAVQ 763



>Os03g0742800 Similar to Auxin-responsive protein IAA14 (Indoleacetic
           acid-induced protein 14) (SOLITARY-ROOT protein)
          Length = 757

 Score =  345 bits (886), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 171/351 (48%), Positives = 228/351 (64%), Gaps = 8/351 (2%)

Query: 1   IKVQGIIGPCTSLEKKGALCADTVVGQGNTTAWKMCGLDRNTSLTVFFDVSPSERSSQPG 60
           +K+ G +GPC SL +K +  +D  +G+G T  WKM  +D  T +  FF V  S  +  P 
Sbjct: 415 VKICGALGPCISLHRKNSSVSDKEIGEGGTNYWKMSTVDSKTCIVFFFRVDCSHNTEPPT 474

Query: 61  HQNPDLYIQFVTSYQHPEGQMRIRVTTICRKWVDGSTNTEELVEGFDQETAAVVLARYIS 120
                 +IQF+T Y+H +G  R+RVTT+ R+W      + E+  GFDQE AA V+AR   
Sbjct: 475 ----VFFIQFMTRYRHGDGSYRLRVTTVARRW--AGPRSPEIAAGFDQEAAAAVMARLAV 528

Query: 121 LKMEMEEEFDATRWLDRSLIRLCSRFGDYRKDDPXXXXXXXXXXXXPQFMFNLRRSQFVQ 180
            + E     D  RWLD+ LIR  ++FG+Y  +DP            PQFM+ LRRSQF+ 
Sbjct: 529 HRAETYHVRDVIRWLDKMLIRFTAKFGNYVPEDPSTFRLSTNFSLYPQFMYYLRRSQFID 588

Query: 181 VFNNSPDETAYFRMLLNRESITNSVAMIQPSLISFSFDLPPSPVFLDVASIAADRILLLD 240
           VFN+SPDETA+FR++LNRE +  S+ MIQP+L  +SFD PP PV LDV+SI+ D ILL D
Sbjct: 589 VFNSSPDETAFFRLMLNREGVVGSLIMIQPTLFQYSFDGPPIPVLLDVSSISPDVILLFD 648

Query: 241 AYFSVVIFHGMTIAQWRNMGYQNQPEHQQFAQLLQAPHEEAQIIIKGRFPAPRLVVCDQH 300
           +YF +VI +G  IAQWR +GY   P H+   +LL+AP  +A+ ++  RFP P+L+ CDQH
Sbjct: 649 SYFYIVIHYGSKIAQWRKLGYHKDPNHENLRKLLEAPEVDAEALLVDRFPVPKLIKCDQH 708

Query: 301 GSQARFLLAKLNPSATYNSAHDVPPGSDIIFTDDVSFQVFCEHLQRLAVQS 351
           GSQARFLLA+LNPS T  +   +  GS++IFTDDVS QVF EHLQ LAVQ 
Sbjct: 709 GSQARFLLARLNPSVTQKT--QLSDGSEVIFTDDVSLQVFIEHLQELAVQG 757



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,616,704
Number of extensions: 442519
Number of successful extensions: 880
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 876
Number of HSP's successfully gapped: 3
Length of query: 351
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 249
Effective length of database: 11,709,973
Effective search space: 2915783277
Effective search space used: 2915783277
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 156 (64.7 bits)