Os11g0433500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein transport protein Sec23A (SEC23-related protein A).
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Os11g0433500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein transport protein Sec23A (SEC23-related protein A).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.88 | 0.328 | 9.96 | 0.782 | 0.586 | -0.244 | -0.49 | -2.18 | 0.169 | 8.73 | 29.65 | 3971 | -- | -- |
| 51.14 | 0.333 | 10 | 0.574 | 0.644 | -0.354 | -0.518 | -- | 0.154 | 8.53 | 31.9 | 4063 | -- | -- |
| 49.59 | 0.328 | 9.96 | 0.807 | 0.593 | -0.261 | -- | -2.22 | 0.176 | 8.91 | 29.5 | 3935 | -- | -- |
| 50.34 | 0.33 | 9.98 | 0.393 | 0.607 | -0.508 | -- | -- | 0.215 | 8.85 | 30.3 | 3967 | -- | -- |
| 68.63 | 0.386 | 9.98 | 0.865 | -- | -0.171 | -- | -2.28 | 0.169 | -- | 29.3 | 4256 | -- | -- |
| 57.28 | 0.355 | 10 | 0.502 | 0.571 | -- | -0.597 | -- | 0.0842 | 8.43 | -- | -- | -- | -- |
| 58.35 | 0.358 | 10 | 0.485 | 0.569 | -- | -- | -- | 0.0851 | 8.65 | -- | -- | -- | -- |
| 69.47 | 0.388 | 10 | 0.375 | -- | -0.451 | -- | -- | 0.171 | -- | 30.31 | 4319 | -- | -- |
| 53.34 | 0.34 | 10 | -- | 0.586 | -0.514 | -- | -- | 0.123 | 8.86 | 29.8 | 3990 | -- | -- |
| 76.64 | 0.409 | 10 | 0.487 | -- | -- | -- | -- | 0.0901 | -- | -- | -- | -- | -- |
| 64.56 | 0.376 | 10 | -- | 0.571 | -- | -- | -- | 0.0311 | 8.58 | -- | -- | -- | -- |
| 72.88 | 0.398 | 10 | -- | -- | -0.525 | -- | -- | 0.117 | -- | 29.9 | 4319 | -- | -- |
| 82.89 | 0.425 | 10 | -- | -- | -- | -- | -- | 0.036 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.97 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 3 | 48.07 | temperature | 30 | 4320 | < th | dose independent | rect. | 20 | 13 |
| 11 | 48.30 | wind | 1 | 1440 | < th | dose dependent | rect. | 6 | 2 |
| 15 | 48.38 | temperature | 30 | 4320 | < th | dose independent | rect. | 24 | 10 |
| 17 | 48.39 | temperature | 30 | 4320 | < th | dose independent | rect. | 2 | 8 |
| 22 | 48.41 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 6 |
| 25 | 48.45 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 2 |
| 44 | 48.52 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 4 |
| 61 | 48.54 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 63 | 48.55 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 2 |
| 77 | 48.57 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 113 | 48.63 | temperature | 30 | 4320 | < th | dose independent | sin | 7 | NA |
| 120 | 48.67 | temperature | 30 | 4320 | > th | dose independent | sin | 7 | NA |
| 128 | 48.71 | radiation | 40 | 4320 | < th | dose dependent | rect. | 18 | 12 |
| 132 | 48.73 | radiation | 40 | 4320 | < th | dose dependent | rect. | 24 | 6 |
| 208 | 48.81 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 10 |
| 323 | 48.93 | temperature | 30 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 408 | 49.02 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 23 |
| 414 | 49.03 | temperature | 10 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 442 | 49.05 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 23 |
| 447 | 49.06 | temperature | 30 | 4320 | < th | dose independent | rect. | 1 | 20 |
| 451 | 49.06 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 23 |
| 460 | 49.07 | temperature | 30 | 4320 | < th | dose independent | no | NA | NA |
| 551 | 49.08 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 11 |
| 552 | 49.09 | temperature | 30 | 4320 | > th | dose independent | no | NA | NA |
| 554 | 49.09 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 2 |
| 658 | 49.10 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 23 |
| 690 | 49.13 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 23 |
| 691 | 49.13 | temperature | 30 | 4320 | > th | dose dependent | sin | 8 | NA |
| 726 | 49.16 | wind | 1 | 1440 | < th | dose independent | rect. | 6 | 2 |
| 771 | 49.19 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 2 |
| 806 | 49.21 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 13 |
| 844 | 49.23 | wind | 1 | 1440 | < th | dose dependent | rect. | 3 | 5 |
| 905 | 49.28 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 20 |