BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0423800 Os11g0423800|AK064691
         (152 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0423800  Similar to Mitochondrial basic amino acid carrier   268   9e-73
Os10g0573800  Mitochondrial substrate carrier family protein       67   6e-12

>Os11g0423800 Similar to Mitochondrial basic amino acid carrier
          Length = 152

 Score =  268 bits (686), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 131/152 (86%), Positives = 131/152 (86%)

Query: 1   VRPFGEYAEMTXXXXXXXXXXXXXXXXXXXXXVGHPFDTVKVKLQAHNTTAHGKVYRNAF 60
           VRPFGEYAEMT                     VGHPFDTVKVKLQAHNTTAHGKVYRNAF
Sbjct: 1   VRPFGEYAEMTGAGDAAKEYAAGCAAGIAQVAVGHPFDTVKVKLQAHNTTAHGKVYRNAF 60

Query: 61  HCTRRILVEEGMRGLYKGASSSFIGIALESSLFFGTYSQAKQLLKGKSEDGRPQLQVIIP 120
           HCTRRILVEEGMRGLYKGASSSFIGIALESSLFFGTYSQAKQLLKGKSEDGRPQLQVIIP
Sbjct: 61  HCTRRILVEEGMRGLYKGASSSFIGIALESSLFFGTYSQAKQLLKGKSEDGRPQLQVIIP 120

Query: 121 SAACSGALISCILTPTELMKNASSREACIAWY 152
           SAACSGALISCILTPTELMKNASSREACIAWY
Sbjct: 121 SAACSGALISCILTPTELMKNASSREACIAWY 152



>Os10g0573800 Mitochondrial substrate carrier family protein
          Length = 131

 Score = 66.6 bits (161), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 62/114 (54%), Gaps = 11/114 (9%)

Query: 33  VGHPFDTVKVKLQAHNTTAHGKV--YRNAFHCTRRILVEEGMRGLYKGASSSFIGIALES 90
           VGHPFDT+KVKLQ+  T A G+   Y  A    ++ +  EG RGLYKG  +    +A  +
Sbjct: 21  VGHPFDTIKVKLQSQPTPAPGQFPKYAGAVDAVKQTIATEGPRGLYKGMGAPLATVAAFN 80

Query: 91  SLFFGTYSQAKQLLKGKSEDGRP----QLQVIIPSAACSGALISCILTPTELMK 140
           +L F    Q + LL  +SE G+P    Q  V    A  + + ++C   PTEL+K
Sbjct: 81  ALLFTVRGQMEALL--RSEPGQPLTVNQQVVAGAGAGVAVSFLAC---PTELIK 129



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,241,653
Number of extensions: 139655
Number of successful extensions: 508
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 520
Number of HSP's successfully gapped: 3
Length of query: 152
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 60
Effective length of database: 12,232,113
Effective search space: 733926780
Effective search space used: 733926780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 151 (62.8 bits)