Os11g0423800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Mitochondrial basic amino acid carrier.
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Os11g0423800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Mitochondrial basic amino acid carrier.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.85 | 0.265 | 8.34 | -0.394 | 0.356 | -0.681 | -0.542 | -0.302 | 0.158 | 21 | 17.86 | 74 | -- | -- |
| 31.88 | 0.263 | 8.33 | -0.347 | 0.353 | -0.676 | -0.521 | -- | 0.174 | 20.9 | 18.9 | 66 | -- | -- |
| 32.8 | 0.267 | 8.33 | -0.332 | 0.354 | -0.676 | -- | -0.000641 | 0.173 | 21 | 18.6 | 68 | -- | -- |
| 32.8 | 0.267 | 8.33 | -0.329 | 0.355 | -0.677 | -- | -- | 0.173 | 21 | 18.6 | 68 | -- | -- |
| 38.54 | 0.291 | 8.32 | -0.289 | -- | -0.769 | -- | 0.19 | 0.192 | -- | 18.6 | 68 | -- | -- |
| 39 | 0.293 | 8.36 | -0.495 | 0.429 | -- | -0.322 | -- | 0.0575 | 23.1 | -- | -- | -- | -- |
| 39.42 | 0.294 | 8.36 | -0.483 | 0.43 | -- | -- | -- | 0.0581 | 23.2 | -- | -- | -- | -- |
| 38.54 | 0.29 | 8.32 | -0.313 | -- | -0.802 | -- | -- | 0.185 | -- | 17.5 | 16 | -- | -- |
| 35.3 | 0.277 | 8.32 | -- | 0.36 | -0.845 | -- | -- | 0.227 | 20.5 | 17.28 | 75 | -- | -- |
| 50.97 | 0.334 | 8.35 | -0.472 | -- | -- | -- | -- | 0.062 | -- | -- | -- | -- | -- |
| 45.56 | 0.316 | 8.35 | -- | 0.425 | -- | -- | -- | 0.112 | 23.2 | -- | -- | -- | -- |
| 40.95 | 0.298 | 8.31 | -- | -- | -0.892 | -- | -- | 0.23 | -- | 17.3 | 4 | -- | -- |
| 56.86 | 0.352 | 8.34 | -- | -- | -- | -- | -- | 0.114 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.33 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 22 |
| 9 | 31.55 | temperature | 20 | 30 | > th | dose dependent | rect. | 6 | 23 |
| 16 | 31.75 | temperature | 20 | 90 | > th | dose dependent | rect. | 10 | 23 |
| 19 | 31.83 | temperature | 20 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 29 | 31.97 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 35 | 32.03 | temperature | 20 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 48 | 32.12 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 55 | 32.15 | temperature | 20 | 30 | > th | dose dependent | rect. | 2 | 23 |
| 66 | 32.18 | temperature | 20 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 72 | 32.22 | temperature | 15 | 270 | > th | dose dependent | rect. | 8 | 23 |
| 90 | 32.29 | temperature | 30 | 270 | < th | dose independent | rect. | 14 | 23 |
| 93 | 32.29 | temperature | 20 | 90 | > th | dose dependent | rect. | 4 | 23 |
| 109 | 32.34 | temperature | 30 | 270 | < th | dose independent | rect. | 12 | 23 |
| 119 | 32.39 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 134 | 32.45 | temperature | 25 | 720 | > th | dose dependent | rect. | 6 | 5 |
| 170 | 32.55 | temperature | 20 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 171 | 32.56 | temperature | 30 | 270 | < th | dose independent | no | NA | NA |
| 173 | 32.57 | temperature | 30 | 270 | > th | dose independent | rect. | 18 | 23 |
| 174 | 32.57 | temperature | 30 | 270 | < th | dose independent | rect. | 24 | 23 |
| 184 | 32.58 | temperature | 30 | 270 | < th | dose independent | rect. | 20 | 23 |
| 190 | 32.59 | temperature | 25 | 90 | > th | dose dependent | rect. | 6 | 14 |
| 239 | 32.68 | temperature | 30 | 270 | > th | dose independent | no | NA | NA |
| 240 | 32.68 | temperature | 30 | 270 | > th | dose independent | rect. | 8 | 11 |
| 369 | 32.71 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 370 | 32.72 | temperature | 30 | 270 | > th | dose independent | sin | 23 | NA |
| 396 | 32.75 | temperature | 30 | 270 | > th | dose independent | rect. | 13 | 23 |
| 401 | 32.77 | temperature | 30 | 270 | > th | dose independent | rect. | 15 | 23 |
| 471 | 32.82 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 23 |
| 487 | 32.84 | temperature | 25 | 270 | > th | dose dependent | sin | 0 | NA |
| 495 | 32.85 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 23 |
| 507 | 32.86 | temperature | 30 | 270 | < th | dose independent | sin | 22 | NA |
| 640 | 32.91 | temperature | 30 | 270 | < th | dose independent | rect. | 16 | 23 |
| 677 | 32.94 | temperature | 30 | 270 | < th | dose independent | rect. | 18 | 23 |
| 704 | 32.95 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 708 | 32.96 | temperature | 25 | 90 | > th | dose dependent | sin | 20 | NA |
| 720 | 32.96 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 22 |
| 728 | 32.97 | temperature | 25 | 90 | > th | dose dependent | rect. | 11 | 9 |
| 770 | 33.00 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 772 | 33.01 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 805 | 33.03 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 890 | 33.09 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 923 | 33.11 | temperature | 30 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 935 | 33.13 | temperature | 30 | 720 | > th | dose independent | rect. | 9 | 2 |