BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0423800 Os11g0423800|AK064691
(152 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G33820.1 | chr2:14306293-14308293 REVERSE LENGTH=312 139 6e-34
AT5G46800.1 | chr5:18988779-18989810 REVERSE LENGTH=301 69 1e-12
AT5G42130.1 | chr5:16835572-16836810 REVERSE LENGTH=413 54 5e-08
AT5G66380.1 | chr5:26513645-26515533 REVERSE LENGTH=309 52 1e-07
AT3G54110.1 | chr3:20038890-20040996 FORWARD LENGTH=307 52 1e-07
AT1G34065.1 | chr1:12398717-12401036 REVERSE LENGTH=346 49 1e-06
AT5G56450.1 | chr5:22858772-22859764 REVERSE LENGTH=331 49 1e-06
AT5G58970.1 | chr5:23808642-23811018 REVERSE LENGTH=306 48 2e-06
AT5G19760.1 | chr5:6679591-6681845 REVERSE LENGTH=299 48 2e-06
AT3G55640.1 | chr3:20640048-20642411 FORWARD LENGTH=333 48 2e-06
AT2G37890.1 | chr2:15862017-15863849 REVERSE LENGTH=338 46 7e-06
>AT2G33820.1 | chr2:14306293-14308293 REVERSE LENGTH=312
Length = 311
Score = 139 bits (350), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 65/108 (60%), Positives = 80/108 (74%)
Query: 33 VGHPFDTVKVKLQAHNTTAHGKVYRNAFHCTRRILVEEGMRGLYKGASSSFIGIALESSL 92
VGHPFDTVKVKLQ HNT G Y+N HC RIL EG++GLY+GA+SSF+G+A ESSL
Sbjct: 31 VGHPFDTVKVKLQKHNTDVQGLRYKNGLHCASRILQTEGVKGLYRGATSSFMGMAFESSL 90
Query: 93 FFGTYSQAKQLLKGKSEDGRPQLQVIIPSAACSGALISCILTPTELMK 140
FG YSQAK L+G D P+ ++I+PSA GA+IS +L PTEL+K
Sbjct: 91 MFGIYSQAKLFLRGTLPDDGPRPEIIVPSAMFGGAIISFVLCPTELVK 138
>AT5G46800.1 | chr5:18988779-18989810 REVERSE LENGTH=301
Length = 300
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 62/111 (55%), Gaps = 5/111 (4%)
Query: 33 VGHPFDTVKVKLQAHNTTAHGKV--YRNAFHCTRRILVEEGMRGLYKGASSSFIGIALES 90
VGHPFDT+KVKLQ+ T A G++ Y A ++ + EG +GLYKG + +A +
Sbjct: 21 VGHPFDTIKVKLQSQPTPAPGQLPRYTGAIDAVKQTVASEGTKGLYKGMGAPLATVAAFN 80
Query: 91 SLFFGTYSQAKQLLKGKSEDGRP-QLQVIIPSAACSGALISCILTPTELMK 140
++ F Q + LL +SE G P + + A +G +S + PTEL+K
Sbjct: 81 AVLFTVRGQMEGLL--RSEAGVPLTISQQFVAGAGAGFAVSFLACPTELIK 129
>AT5G42130.1 | chr5:16835572-16836810 REVERSE LENGTH=413
Length = 412
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 36 PFDTVKVKLQAHNTTAHGKVYRNAFHCTRRILVEEGMRGLYKGASSSFIGIALESSLFFG 95
P D +K KLQ T +VY N F + +G+ G Y G S+ +G S+++FG
Sbjct: 134 PLDAIKTKLQ---TKGASQVYSNTFDAIVKTFQAKGILGFYSGVSAVIVGSTFSSAVYFG 190
Query: 96 TYSQAKQLLKGKSEDGRPQLQVIIPSAACSGALI-SCILTPTELM 139
T K LL K D L I P+A G +I S I+ P EL+
Sbjct: 191 TCEFGKSLL-SKFPDFPTVL--IPPTAGAMGNIISSAIMVPKELI 232
>AT5G66380.1 | chr5:26513645-26515533 REVERSE LENGTH=309
Length = 308
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Query: 35 HPFDTVKVKLQAHNTTAHG-KVYRNAFHCTRRILVEEGMRGLYKGASSSFIGIALESSLF 93
H D V+ + Q ++ Y+N H I EG+RGLY G + IG + L+
Sbjct: 25 HSLDVVRTRFQVNDGRGSSLPTYKNTAHAVFTIARLEGLRGLYAGFFPAVIGSTVSWGLY 84
Query: 94 FGTYSQAKQLLKGKSEDGRPQLQVIIPSAACSGALISCILTPTELMK 140
F Y +AKQ +D + + + SAA +GAL+ P L+K
Sbjct: 85 FFFYGRAKQRYARGRDDEKLSPALHLASAAEAGALVCLCTNPIWLVK 131
>AT3G54110.1 | chr3:20038890-20040996 FORWARD LENGTH=307
Length = 306
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 46/109 (42%), Gaps = 4/109 (3%)
Query: 36 PFDTVKVKLQAHNTTAHGKV----YRNAFHCTRRILVEEGMRGLYKGASSSFIGIALESS 91
P DT KV+LQ + G V YR I EEG+R L+KG L
Sbjct: 31 PLDTAKVRLQLQKSALAGDVTLPKYRGLLGTVGTIAREEGLRSLWKGVVPGLHRQCLFGG 90
Query: 92 LFFGTYSQAKQLLKGKSEDGRPQLQVIIPSAACSGALISCILTPTELMK 140
L G Y K L GK G L I + +GAL + PT+L+K
Sbjct: 91 LRIGMYEPVKNLYVGKDFVGDVPLSKKILAGLTTGALGIMVANPTDLVK 139
>AT1G34065.1 | chr1:12398717-12401036 REVERSE LENGTH=346
Length = 345
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 36 PFDTVKVKLQAHNTTAHGKVYRNAFHCTRRILVEEGMRGLYKGASSSFIGIALESSLFFG 95
P D +K +L + G Y+ C + I+ EEG L+KG + I + S+FFG
Sbjct: 270 PLDVIKTRLMVQGS---GTQYKGVSDCIKTIIREEGSSALWKGMGPRVLWIGIGGSIFFG 326
Query: 96 TYSQAKQLLKGKSE 109
+ KQ+L +S+
Sbjct: 327 VLEKTKQILSERSQ 340
>AT5G56450.1 | chr5:22858772-22859764 REVERSE LENGTH=331
Length = 330
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 33 VGHPFDTVKVKLQAHNTTAHGKVYRNAFHCTRRILVEEGMRGLYKGASSSFIGIALESSL 92
V +P D +L A + +R H I ++G+RG+Y+G +S G+ + L
Sbjct: 158 VVYPLDIAHTRLAADIGKPEARQFRGIHHFLSTIHKKDGVRGIYRGLPASLHGVIIHRGL 217
Query: 93 FFGTYSQAKQLLKGKSEDGRPQLQV 117
+FG + K++ SED +P+L +
Sbjct: 218 YFGGFDTVKEIF---SEDTKPELAL 239
>AT5G58970.1 | chr5:23808642-23811018 REVERSE LENGTH=306
Length = 305
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 47/110 (42%), Gaps = 5/110 (4%)
Query: 36 PFDTVKVKLQAHNTTAHGK-----VYRNAFHCTRRILVEEGMRGLYKGASSSFIGIALES 90
P DT KV+LQ G YR + I EEG+ GL+KG + +
Sbjct: 32 PLDTAKVRLQLQRKIPTGDGENLPKYRGSIGTLATIAREEGISGLWKGVIAGLHRQCIYG 91
Query: 91 SLFFGTYSQAKQLLKGKSEDGRPQLQVIIPSAACSGALISCILTPTELMK 140
L G Y K LL G G L I +A +GA+ + PT+L+K
Sbjct: 92 GLRIGLYEPVKTLLVGSDFIGDIPLYQKILAALLTGAIAIIVANPTDLVK 141
>AT5G19760.1 | chr5:6679591-6681845 REVERSE LENGTH=299
Length = 298
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 6/112 (5%)
Query: 33 VGHPFDTVKVKLQAHNTT--AHGKVYRNAFHCTRRILVEEGMRGLYKGASSSFI-GIALE 89
VG P D +++QA NT A + Y NAFH RI +EG+ L+KG + + +AL
Sbjct: 122 VGSPADLALIRMQADNTLPLAQRRNYTNAFHALTRISADEGVLALWKGCGPTVVRAMALN 181
Query: 90 SSLFFGTYSQAKQLLKGKSEDGRPQLQVIIPSAACSGALISCILTPTELMKN 141
+ +Y Q+ + + + G ++ ++ ++A SG + P + +K
Sbjct: 182 MGM-LASYDQSAEYM--RDNLGFGEMSTVVGASAVSGFCAAACSLPFDFVKT 230
>AT3G55640.1 | chr3:20640048-20642411 FORWARD LENGTH=333
Length = 332
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 10/117 (8%)
Query: 35 HPFDTVKVKLQAHNTTAHGKVYRNAFHCTRRILVEEGMRGLYKGASSSFIGIALESSLFF 94
+P D V+ +L A + Y +H R I +EG+ GLYKG ++ +G+ ++ F
Sbjct: 160 YPLDLVRTRLAAQTKVIY---YSGIWHTLRSITTDEGILGLYKGLGTTLVGVGPSIAISF 216
Query: 95 GTYSQAKQLLKGKSEDGRPQLQVIIPSAAC---SGALISCILTPTELMKNASSREAC 148
Y L+ RP I+ S AC SG S P +L++ E
Sbjct: 217 SVYES----LRSYWRSTRPHDSPIMVSLACGSLSGIASSTATFPLDLVRRRKQLEGI 269
>AT2G37890.1 | chr2:15862017-15863849 REVERSE LENGTH=338
Length = 337
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 35 HPFDTVKVKLQAHNTTAHGKVYRNAFHCTRRILVEEGMRGLYKGASSSFIGIALESSLFF 94
+P D V+ +L A + Y+ H R I EEG+ GLYKG ++ +G+ ++ F
Sbjct: 167 YPLDLVRTRLAAQRNAIY---YQGIEHTFRTICREEGILGLYKGLGATLLGVGPSLAINF 223
Query: 95 GTYSQAKQLLKGKSEDGRPQLQVIIPSAACSGALISCILTPTELMK 140
Y K L L V + S +GA+ S P +L++
Sbjct: 224 AAYESMK-LFWHSHRPNDSDLVVSLVSGGLAGAVSSTATYPLDLVR 268
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.133 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,712,862
Number of extensions: 91162
Number of successful extensions: 319
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 336
Number of HSP's successfully gapped: 12
Length of query: 152
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 62
Effective length of database: 8,639,129
Effective search space: 535625998
Effective search space used: 535625998
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 107 (45.8 bits)