BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0422000 Os11g0422000|AK062670
         (67 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0422000  Conserved hypothetical protein                      112   8e-26
Os01g0829300  Conserved hypothetical protein                       91   1e-19

>Os11g0422000 Conserved hypothetical protein
          Length = 67

 Score =  112 bits (279), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 53/53 (100%), Positives = 53/53 (100%)

Query: 15 GDLGMKRAGRNRAAKTRLSNASCPRFSTPPHLDSIEERVTKFGHMRSRFVGQH 67
          GDLGMKRAGRNRAAKTRLSNASCPRFSTPPHLDSIEERVTKFGHMRSRFVGQH
Sbjct: 15 GDLGMKRAGRNRAAKTRLSNASCPRFSTPPHLDSIEERVTKFGHMRSRFVGQH 67



>Os01g0829300 Conserved hypothetical protein
          Length = 103

 Score = 91.3 bits (225), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/52 (86%), Positives = 45/52 (86%)

Query: 15  GDLGMKRAGRNRAAKTRLSNASCPRFSTPPHLDSIEERVTKFGHMRSRFVGQ 66
           GDLGMKRAGRNRAAK RLSNA CP FST P LDS EERVTKFGH RSRFVGQ
Sbjct: 51  GDLGMKRAGRNRAAKPRLSNAPCPCFSTLPRLDSAEERVTKFGHTRSRFVGQ 102



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.135    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,851,458
Number of extensions: 48355
Number of successful extensions: 197
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 2
Length of query: 67
Length of database: 17,035,801
Length adjustment: 39
Effective length of query: 28
Effective length of database: 14,999,455
Effective search space: 419984740
Effective search space used: 419984740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 149 (62.0 bits)