Os01g0829300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0829300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1051.86 | 1.52 | 4.13 | 8.87 | 0.593 | 2.72 | 0.66 | -30.9 | -1.2 | 19.6 | 29.97 | 4043 | -- | -- |
| 1141.07 | 1.59 | 4.77 | 3.85 | 0.502 | -0.485 | 0.852 | -- | -1.58 | 21.5 | 29.97 | 4043 | -- | -- |
| 1052.68 | 1.51 | 4.13 | 8.84 | 0.57 | 2.73 | -- | -31.1 | -1.19 | 19.5 | 29.9 | 3961 | -- | -- |
| 1125.95 | 1.56 | 4.73 | 3.85 | 0.431 | -0.627 | -- | -- | -1.48 | 21.5 | 29.9 | 4677 | -- | -- |
| 1071.34 | 1.52 | 4.13 | 8.72 | -- | 2.64 | -- | -30.5 | -1.2 | -- | 29.93 | 3941 | -- | -- |
| 1148.72 | 1.59 | 4.78 | 3.91 | 0.518 | -- | 0.833 | -- | -1.59 | 20.4 | -- | -- | -- | -- |
| 1150.81 | 1.59 | 4.78 | 3.88 | 0.523 | -- | -- | -- | -1.59 | 20.1 | -- | -- | -- | -- |
| 1132.13 | 1.57 | 4.75 | 3.65 | -- | -0.904 | -- | -- | -1.4 | -- | 29.9 | 4008 | -- | -- |
| 1416.83 | 1.75 | 4.82 | -- | 0.642 | -1.83 | -- | -- | -2.39 | 18.2 | 26.19 | 5693 | -- | -- |
| 1165.81 | 1.6 | 4.76 | 3.88 | -- | -- | -- | -- | -1.6 | -- | -- | -- | -- | -- |
| 1548.23 | 1.84 | 4.87 | -- | 0.505 | -- | -- | -- | -2.03 | 20.7 | -- | -- | -- | -- |
| 1120.78 | 1.56 | 5.13 | -- | -- | -3.06 | -- | -- | -3.24 | -- | 26.24 | 47520 | -- | -- |
| 1562.64 | 1.85 | 4.86 | -- | -- | -- | -- | -- | -2.03 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 1050.04 | temperature | 25 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 3 | 1051.92 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 17 |
| 8 | 1052.60 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 5 |
| 21 | 1053.55 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 21 | 22 |
| 24 | 1053.59 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 10 |
| 27 | 1053.67 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 14 |
| 29 | 1053.69 | temperature | 25 | 4320 | > th | dose dependent | rect. | 8 | 8 |
| 38 | 1053.83 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 2 |
| 52 | 1054.16 | temperature | 25 | 4320 | > th | dose dependent | sin | 5 | NA |
| 89 | 1055.01 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 22 |
| 120 | 1055.82 | temperature | 30 | 4320 | < th | dose independent | rect. | 9 | 7 |
| 127 | 1056.03 | temperature | 30 | 4320 | > th | dose independent | rect. | 9 | 7 |
| 132 | 1056.16 | temperature | 30 | 4320 | < th | dose independent | rect. | 5 | 11 |
| 136 | 1056.20 | temperature | 30 | 4320 | < th | dose independent | rect. | 24 | 16 |
| 141 | 1056.23 | temperature | 30 | 4320 | < th | dose independent | rect. | 20 | 20 |
| 143 | 1056.24 | temperature | 30 | 4320 | < th | dose independent | rect. | 3 | 13 |
| 171 | 1056.33 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 23 |
| 176 | 1056.37 | temperature | 30 | 4320 | > th | dose independent | rect. | 17 | 23 |
| 177 | 1056.43 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 22 |
| 203 | 1056.80 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 23 |
| 214 | 1057.03 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 22 |
| 217 | 1057.04 | temperature | 25 | 4320 | > th | dose dependent | rect. | 8 | 23 |
| 219 | 1057.07 | temperature | 30 | 4320 | < th | dose independent | sin | 3 | NA |
| 220 | 1057.07 | temperature | 25 | 4320 | > th | dose dependent | rect. | 8 | 20 |
| 221 | 1057.08 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 238 | 1057.17 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 17 |
| 240 | 1057.17 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 20 |
| 283 | 1057.36 | radiation | 10 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 291 | 1057.41 | temperature | 25 | 4320 | > th | dose dependent | rect. | 14 | 23 |
| 309 | 1057.55 | temperature | 30 | 4320 | < th | dose independent | rect. | 9 | 12 |
| 316 | 1057.57 | temperature | 30 | 4320 | < th | dose independent | rect. | 9 | 19 |
| 321 | 1057.58 | temperature | 30 | 4320 | < th | dose independent | rect. | 9 | 16 |
| 329 | 1057.60 | temperature | 30 | 4320 | > th | dose independent | sin | 3 | NA |
| 332 | 1057.60 | temperature | 30 | 4320 | < th | dose independent | rect. | 9 | 23 |
| 389 | 1057.82 | temperature | 30 | 4320 | < th | dose independent | rect. | 5 | 16 |
| 396 | 1057.84 | temperature | 30 | 4320 | < th | dose independent | rect. | 5 | 23 |
| 398 | 1057.85 | temperature | 30 | 4320 | < th | dose independent | rect. | 5 | 20 |
| 400 | 1057.85 | temperature | 30 | 4320 | < th | dose independent | rect. | 23 | 22 |
| 422 | 1057.89 | temperature | 30 | 4320 | < th | dose independent | rect. | 3 | 18 |
| 449 | 1057.92 | temperature | 30 | 4320 | < th | dose independent | rect. | 3 | 22 |
| 455 | 1057.93 | temperature | 30 | 4320 | < th | dose independent | no | NA | NA |
| 479 | 1057.95 | temperature | 20 | 43200 | > th | dose dependent | rect. | 2 | 1 |
| 579 | 1058.24 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 13 |
| 589 | 1058.38 | temperature | 30 | 4320 | > th | dose independent | no | NA | NA |
| 682 | 1058.39 | temperature | 25 | 4320 | < th | dose independent | rect. | 24 | 12 |
| 762 | 1059.12 | temperature | 25 | 4320 | < th | dose independent | rect. | 2 | 7 |
| 787 | 1059.76 | temperature | 25 | 4320 | < th | dose independent | rect. | 24 | 10 |
| 809 | 1060.11 | temperature | 25 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 815 | 1060.15 | temperature | 25 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 861 | 1060.46 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 871 | 1060.60 | humidity | 80 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 894 | 1061.03 | temperature | 25 | 4320 | > th | dose independent | rect. | 2 | 7 |
| 897 | 1061.05 | temperature | 25 | 4320 | > th | dose independent | rect. | 24 | 10 |
| 926 | 1061.47 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 10 | 23 |
| 940 | 1061.66 | temperature | 25 | 720 | > th | dose dependent | rect. | 14 | 22 |