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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0422000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.88 (0.0425) R2 : 0.763
β1 : 1.01 (0.166) R2dD : 0.0239 R2D : -0.0993
β2 : 1.83 (0.104) R2dC : 0.163 R2C : 0.0673
β3 : -0.662 (0.118) R2dE : 0.0185 R2E : -0.0649
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 2.16 (0.34) R2dD*E : 0.0262 R2D*E : -0.108
γ1 : -2.5 (0.0922) R2dN8 : 0.556 R2N8 : 0.532
σ : 0.775
deviance : 276.89
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_____
C
peak time of C : 20.7
E
wheather : temperature
threshold : 20.56
memory length : 44
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
270.94 0.773 5.88 0.929 1.82 -0.658 -1.36 1.99 -2.51 20.8 20.5 45 -- --
291.21 0.795 5.93 0.559 1.82 -0.739 -1.7 -- -2.6 20.8 20.52 44 -- --
276.89 0.775 5.88 1.01 1.83 -0.662 -- 2.16 -2.5 20.7 20.56 44 -- --
301.4 0.809 5.93 0.63 1.84 -0.801 -- -- -2.59 20.6 20.6 106 -- --
461.43 1.01 5.82 1.06 -- -0.927 -- 2.17 -2.47 -- 20.3 40 -- --
315.4 0.833 5.96 0.338 1.88 -- -1.9 -- -2.74 21.1 -- -- -- --
327.72 0.848 5.96 0.408 1.9 -- -- -- -2.74 21 -- -- -- --
482.03 1.03 5.86 0.677 -- -0.94 -- -- -2.51 -- 21.6 37 -- --
311.28 0.826 5.94 -- 1.82 -0.683 -- -- -2.67 20.7 20.58 109 -- --
534.59 1.08 5.91 0.41 -- -- -- -- -2.75 -- -- -- -- --
332.11 0.852 5.97 -- 1.9 -- -- -- -2.78 21 -- -- -- --
492.71 1.04 5.87 -- -- -0.836 -- -- -2.59 -- 22 25 -- --
539.03 1.08 5.92 -- -- -- -- -- -2.8 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 256.45 temperature 20 10 > th dose independent rect. 9 16
5 259.96 temperature 20 90 > th dose independent rect. 4 21
13 262.31 temperature 30 10 < th dose dependent rect. 12 17
17 262.93 temperature 30 90 < th dose dependent rect. 12 16
21 263.29 temperature 25 30 < th dose independent rect. 12 16
40 264.17 temperature 10 43200 > th dose independent rect. 9 8
43 264.60 temperature 15 30 > th dose dependent rect. 9 17
51 265.31 temperature 10 43200 > th dose independent rect. 9 10
52 265.41 temperature 30 10 < th dose dependent rect. 12 21
60 266.06 temperature 30 90 < th dose dependent rect. 11 22
79 267.21 temperature 20 30 > th dose independent rect. 14 22
84 267.50 temperature 20 10 > th dose independent rect. 9 21
102 268.80 temperature 15 90 > th dose dependent rect. 4 21
112 269.33 temperature 15 720 > th dose dependent rect. 9 6
117 269.48 humidity 50 14400 > th dose independent rect. 5 4
118 269.73 temperature 10 43200 > th dose independent rect. 11 9
121 269.92 humidity 50 14400 > th dose independent rect. 19 14
122 269.94 temperature 20 30 > th dose independent rect. 7 23
123 269.96 temperature 30 720 > th dose independent rect. 13 1
144 270.33 humidity 50 14400 > th dose independent rect. 21 12
145 270.33 temperature 10 720 > th dose dependent rect. 8 11
179 271.07 temperature 20 30 > th dose independent rect. 16 20
242 272.60 humidity 80 43200 < th dose dependent rect. 1 7
253 272.77 humidity 80 43200 < th dose dependent rect. 3 4
263 272.93 humidity 80 43200 < th dose independent rect. 4 1
267 272.94 temperature 25 10 < th dose dependent rect. 10 23
278 273.06 temperature 30 720 < th dose dependent rect. 9 13
280 273.08 temperature 25 10 < th dose independent sin 14 NA
282 273.13 humidity 60 43200 > th dose independent rect. 1 8
285 273.17 humidity 60 43200 > th dose independent rect. 3 6
292 273.20 temperature 10 720 > th dose dependent sin 23 NA
303 273.31 humidity 80 43200 < th dose independent rect. 1 5
314 273.36 humidity 60 43200 < th dose independent rect. 23 10
317 273.39 temperature 15 30 > th dose dependent rect. 9 21
318 273.40 temperature 20 4320 > th dose independent rect. 14 1
320 273.40 humidity 60 43200 < th dose independent rect. 3 6
323 273.41 humidity 60 43200 < th dose independent rect. 1 8
335 273.48 temperature 20 10 > th dose independent rect. 11 14
359 273.60 temperature 20 4320 < th dose dependent rect. 4 16
372 273.66 temperature 25 10 < th dose independent rect. 12 20
441 273.92 temperature 20 4320 < th dose dependent rect. 4 8
459 274.00 temperature 20 4320 < th dose dependent rect. 4 11
463 274.01 humidity 80 43200 < th dose independent rect. 22 8
475 274.06 temperature 20 4320 < th dose dependent sin 1 NA
511 274.15 temperature 20 10 > th dose independent rect. 16 23
529 274.18 temperature 25 10 < th dose dependent rect. 13 23
530 274.19 temperature 20 10 > th dose independent sin 19 NA
532 274.20 humidity 80 43200 < th dose independent rect. 22 1
586 274.38 temperature 20 4320 < th dose dependent rect. 8 22
590 274.39 temperature 20 4320 < th dose dependent no NA NA
603 274.42 temperature 20 4320 < th dose dependent rect. 13 23
612 274.45 humidity 80 43200 > th dose independent rect. 22 8
616 274.45 temperature 20 4320 < th dose dependent rect. 11 23
655 274.54 temperature 20 10 < th dose independent rect. 10 20
663 274.55 temperature 15 90 > th dose dependent rect. 13 23
674 274.57 temperature 20 4320 < th dose dependent rect. 8 19
711 274.65 humidity 80 43200 > th dose independent rect. 22 2
723 274.68 temperature 20 30 > th dose independent no NA NA
729 274.68 temperature 25 10 < th dose dependent rect. 1 23
764 274.78 humidity 80 43200 > th dose independent rect. 22 4
813 274.87 temperature 20 4320 < th dose dependent sin 17 NA
814 274.87 humidity 50 43200 < th dose dependent rect. 9 1
835 274.92 temperature 20 30 > th dose independent rect. 20 16
864 274.96 temperature 20 4320 < th dose dependent rect. 11 15
879 274.98 temperature 25 10 < th dose dependent rect. 7 23
886 275.00 temperature 15 4320 > th dose independent rect. 4 5
900 275.03 humidity 70 43200 < th dose dependent rect. 7 1
908 275.05 wind 7 14400 > th dose independent sin 6 NA
912 275.05 humidity 70 14400 < th dose dependent rect. 19 2
921 275.08 wind 7 14400 < th dose independent sin 6 NA
943 275.11 wind 5 43200 < th dose dependent rect. 17 14
982 275.19 temperature 25 10 < th dose dependent no NA NA
983 275.20 temperature 20 30 > th dose independent rect. 18 18
995 275.22 humidity 90 720 < th dose dependent rect. 8 4