BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0303500 Os11g0303500|AK068734
         (724 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0303500  Nucleotide-binding, alpha-beta plait domain co...  1292   0.0  
Os05g0122500  PWWP domain containing protein                       70   4e-12

>Os11g0303500 Nucleotide-binding, alpha-beta plait domain containing protein
          Length = 724

 Score = 1292 bits (3343), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 651/724 (89%), Positives = 651/724 (89%)

Query: 1   RGESSSRKKKVLPEAGKKEIMDGEGSVPSIGATEDTLSKTKKSKNQNCAAKKNRNTSKDA 60
           RGESSSRKKKVLPEAGKKEIMDGEGSVPSIGATEDTLSKTKKSKNQNCAAKKNRNTSKDA
Sbjct: 1   RGESSSRKKKVLPEAGKKEIMDGEGSVPSIGATEDTLSKTKKSKNQNCAAKKNRNTSKDA 60

Query: 61  DGLDMDDKGSVPSKGATVDTSRQIKKSKNQNSAVNKNKNTSKDADGLDMDGEGSVPSKGX 120
           DGLDMDDKGSVPSKGATVDTSRQIKKSKNQNSAVNKNKNTSKDADGLDMDGEGSVPSKG 
Sbjct: 61  DGLDMDDKGSVPSKGATVDTSRQIKKSKNQNSAVNKNKNTSKDADGLDMDGEGSVPSKGA 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXDADGLDMDDKGSVPRKGATDDXXXXXXXXXXXXX 180
                                     DADGLDMDDKGSVPRKGATDD             
Sbjct: 121 TDDASSKTKKSKNQNNSAKKNKNTSKDADGLDMDDKGSVPRKGATDDTSIKTKKSKNKNR 180

Query: 181 XXXXXXXXXXDADGLETVGASKKLSKKAVDETLSDSKSARRTRSTRMKGGTPVALKGRGK 240
                     DADGLETVGASKKLSKKAVDETLSDSKSARRTRSTRMKGGTPVALKGRGK
Sbjct: 181 SAKKNKNTSKDADGLETVGASKKLSKKAVDETLSDSKSARRTRSTRMKGGTPVALKGRGK 240

Query: 241 DSGAESLKVEEKNTALLKENKVGRRAGSARKKYKTTGDGDGLEDGNANVSVSSGKRSTRG 300
           DSGAESLKVEEKNTALLKENKVGRRAGSARKKYKTTGDGDGLEDGNANVSVSSGKRSTRG
Sbjct: 241 DSGAESLKVEEKNTALLKENKVGRRAGSARKKYKTTGDGDGLEDGNANVSVSSGKRSTRG 300

Query: 301 ETSVASEARISEQGRKKKKLSELMAVTDVPNPSSGGKSKARGKRSMDASTEKLEDPDRDL 360
           ETSVASEARISEQGRKKKKLSELMAVTDVPNPSSGGKSKARGKRSMDASTEKLEDPDRDL
Sbjct: 301 ETSVASEARISEQGRKKKKLSELMAVTDVPNPSSGGKSKARGKRSMDASTEKLEDPDRDL 360

Query: 361 EDTMKTRKRKKLDTLGDLSSQPQPVSRKSTTKVGELMHKAAGQMSQTRPVRKANGAVSQK 420
           EDTMKTRKRKKLDTLGDLSSQPQPVSRKSTTKVGELMHKAAGQMSQTRPVRKANGAVSQK
Sbjct: 361 EDTMKTRKRKKLDTLGDLSSQPQPVSRKSTTKVGELMHKAAGQMSQTRPVRKANGAVSQK 420

Query: 421 NSRSTKERQVNAPDKSAHSLKVKKGKTDTLTENSLSCSEMLSQLSLAVFNLKKKERFSSA 480
           NSRSTKERQVNAPDKSAHSLKVKKGKTDTLTENSLSCSEMLSQLSLAVFNLKKKERFSSA
Sbjct: 421 NSRSTKERQVNAPDKSAHSLKVKKGKTDTLTENSLSCSEMLSQLSLAVFNLKKKERFSSA 480

Query: 481 GMNFFTDFRKYSYASRSDVEKEIYGKATNTGSCASFSDVDEDIPEKAAGTEPTPLEQPLA 540
           GMNFFTDFRKYSYASRSDVEKEIYGKATNTGSCASFSDVDEDIPEKAAGTEPTPLEQPLA
Sbjct: 481 GMNFFTDFRKYSYASRSDVEKEIYGKATNTGSCASFSDVDEDIPEKAAGTEPTPLEQPLA 540

Query: 541 DHMQDDYWADILINVEEPLSSLRKKKDKGVNRTRKKEHVKKPAMKSSSLGNIEGPTVEGS 600
           DHMQDDYWADILINVEEPLSSLRKKKDKGVNRTRKKEHVKKPAMKSSSLGNIEGPTVEGS
Sbjct: 541 DHMQDDYWADILINVEEPLSSLRKKKDKGVNRTRKKEHVKKPAMKSSSLGNIEGPTVEGS 600

Query: 601 ENKQPNAETQLSVANGTKVXXXXXXXXXFAGLVLHFSRPGAVPSRSDLIKIFSQYGPVXX 660
           ENKQPNAETQLSVANGTKV         FAGLVLHFSRPGAVPSRSDLIKIFSQYGPV  
Sbjct: 601 ENKQPNAETQLSVANGTKVSSEETESSSFAGLVLHFSRPGAVPSRSDLIKIFSQYGPVNE 660

Query: 661 XXXXXXXXXXXXQVIFKRRMDAEAAFAGAGKIGALGPALVSFRLSDFPAAASGNDPRQGA 720
                       QVIFKRRMDAEAAFAGAGKIGALGPALVSFRLSDFPAAASGNDPRQGA
Sbjct: 661 AKAETANNANCAQVIFKRRMDAEAAFAGAGKIGALGPALVSFRLSDFPAAASGNDPRQGA 720

Query: 721 SKSD 724
           SKSD
Sbjct: 721 SKSD 724



>Os05g0122500 PWWP domain containing protein
          Length = 494

 Score = 70.5 bits (171), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/77 (48%), Positives = 48/77 (62%), Gaps = 4/77 (5%)

Query: 629 FAGLVLHFSRPGAVPSRSDLIKIFSQYGPVXXXXXXXXXXXXXXQVIFKRRMDAEAAFAG 688
            AGLVL+F  P AV   S+L+ IFS++GP+               V+FKRR DAEAAF+G
Sbjct: 398 LAGLVLNFICPSAVLPLSELVNIFSKFGPIMEAKTENAYA----MVMFKRRADAEAAFSG 453

Query: 689 AGKIGALGPALVSFRLS 705
             KI AL  +L+SFRL+
Sbjct: 454 TTKINALSSSLISFRLN 470



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.305    0.123    0.329 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 22,297,056
Number of extensions: 923354
Number of successful extensions: 2681
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2663
Number of HSP's successfully gapped: 2
Length of query: 724
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 616
Effective length of database: 11,396,689
Effective search space: 7020360424
Effective search space used: 7020360424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 160 (66.2 bits)