Os11g0303500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nucleotide-binding, alpha-beta plait domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os11g0303500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Nucleotide-binding, alpha-beta plait domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.05 | 0.205 | 12.1 | 0.868 | 0.265 | 0.268 | 0.112 | 1.89 | 0.153 | 11 | 19.24 | 679 | -- | -- |
| 21.42 | 0.217 | 12.1 | 0.481 | 0.105 | 0.429 | -0.395 | -- | 0.0304 | 8.53 | 19.9 | 401 | -- | -- |
| 19.06 | 0.203 | 12.1 | 0.847 | 0.263 | 0.277 | -- | 1.84 | 0.152 | 10.9 | 18.78 | 639 | -- | -- |
| 21.81 | 0.218 | 12.1 | 0.469 | 0.23 | 0.406 | -- | -- | 0.0361 | 9.93 | 18.49 | 407 | -- | -- |
| 21.69 | 0.218 | 12.1 | 0.612 | -- | 0.418 | -- | 0.896 | 0.0709 | -- | 18.78 | 639 | -- | -- |
| 24.38 | 0.231 | 12.1 | 0.565 | 0.206 | -- | -0.137 | -- | 0.105 | 12.1 | -- | -- | -- | -- |
| 24.46 | 0.232 | 12.1 | 0.56 | 0.207 | -- | -- | -- | 0.105 | 12.4 | -- | -- | -- | -- |
| 22.58 | 0.222 | 12.1 | 0.461 | -- | 0.457 | -- | -- | 0.0275 | -- | 18.78 | 639 | -- | -- |
| 23.79 | 0.227 | 12.2 | -- | 0.219 | 0.449 | -- | -- | -0.114 | 12.4 | 18.5 | 47520 | -- | -- |
| 27.16 | 0.244 | 12.1 | 0.553 | -- | -- | -- | -- | 0.101 | -- | -- | -- | -- | -- |
| 32.72 | 0.268 | 12.1 | -- | 0.199 | -- | -- | -- | 0.0422 | 12.2 | -- | -- | -- | -- |
| 26.79 | 0.241 | 12.2 | -- | -- | 0.437 | -- | -- | -0.112 | -- | 18.3 | 47520 | -- | -- |
| 35.23 | 0.277 | 12.1 | -- | -- | -- | -- | -- | 0.0398 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.97 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 20 |
| 25 | 19.05 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 22 |
| 107 | 19.16 | temperature | 10 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 108 | 19.17 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 114 | 19.18 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 133 | 19.21 | temperature | 20 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 140 | 19.22 | temperature | 10 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 161 | 19.26 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 217 | 19.32 | temperature | 25 | 720 | > th | dose dependent | rect. | 6 | 13 |
| 345 | 19.41 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 354 | 19.42 | temperature | 20 | 720 | > th | dose dependent | sin | 21 | NA |
| 377 | 19.44 | temperature | 25 | 270 | > th | dose dependent | sin | 12 | NA |
| 388 | 19.45 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 409 | 19.47 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 4 |
| 421 | 19.48 | temperature | 30 | 720 | > th | dose independent | rect. | 11 | 3 |
| 461 | 19.51 | temperature | 30 | 720 | > th | dose independent | rect. | 9 | 6 |
| 463 | 19.51 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 592 | 19.58 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 594 | 19.59 | temperature | 15 | 270 | > th | dose dependent | sin | 15 | NA |
| 599 | 19.59 | temperature | 25 | 270 | > th | dose dependent | rect. | 16 | 16 |
| 622 | 19.60 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 644 | 19.62 | temperature | 30 | 720 | > th | dose independent | sin | 4 | NA |
| 672 | 19.64 | temperature | 20 | 270 | > th | dose dependent | rect. | 15 | 18 |
| 707 | 19.66 | temperature | 15 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 729 | 19.67 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 731 | 19.67 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 781 | 19.70 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 22 |
| 845 | 19.73 | temperature | 20 | 90 | > th | dose dependent | rect. | 17 | 10 |
| 855 | 19.73 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 22 |
| 875 | 19.75 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 876 | 19.75 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 10 |
| 899 | 19.76 | temperature | 30 | 720 | < th | dose independent | sin | 7 | NA |
| 900 | 19.76 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 903 | 19.76 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 925 | 19.77 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 969 | 19.78 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 974 | 19.78 | temperature | 30 | 720 | < th | dose dependent | rect. | 12 | 23 |
| 979 | 19.79 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 994 | 19.79 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 995 | 19.79 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 23 |