BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0303500 Os11g0303500|AK068734
         (724 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G02950.1  | chr5:690953-692851 FORWARD LENGTH=633               68   2e-11
AT3G54760.1  | chr3:20269659-20272037 REVERSE LENGTH=793           64   4e-10

>AT5G02950.1 | chr5:690953-692851 FORWARD LENGTH=633
          Length = 632

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 44/74 (59%)

Query: 631 GLVLHFSRPGAVPSRSDLIKIFSQYGPVXXXXXXXXXXXXXXQVIFKRRMDAEAAFAGAG 690
            LVL+F+  G+VPS   L +IF +YGP+              +V+FKR  DA+ AF+ AG
Sbjct: 548 ALVLNFADSGSVPSEEKLNEIFKRYGPLHESKTKVTMKGKRAKVVFKRGEDAKTAFSSAG 607

Query: 691 KIGALGPALVSFRL 704
           K    GP+L+S+RL
Sbjct: 608 KYSIFGPSLLSYRL 621



>AT3G54760.1 | chr3:20269659-20272037 REVERSE LENGTH=793
          Length = 792

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 97/255 (38%), Gaps = 40/255 (15%)

Query: 454 SLSCSEMLSQLSLAVFNLKKKERFSSAGMNFFTDFRKYSYASRSDVEK--EIYGKATNTG 511
           +LS    +SQL  A  +  K+   S     FF DFR  S + +   EK  +  G+ +N+ 
Sbjct: 548 TLSVESFVSQLHCAATDPVKENVVSDIATGFFLDFRNSSASQQVTTEKVSKKRGRPSNSN 607

Query: 512 SCASFSDVDEDIPEKAAGTEPTPLEQPLADHMQDDYWAD-ILINVEEPLSSLRKKKDKGV 570
                           AGTE    E+     M D YW D ++ N  E  +   +K +  V
Sbjct: 608 ---------------VAGTEAFEFEE-----MGDTYWTDRVIHNGGEGQTPATEKGNYQV 647

Query: 571 NRTRKKEHVKKPAMKSSSLGNIEGPTVEGSENKQPNAETQLSVANGTKVXXXXXXXXXFA 630
                K     PA             V+ +       ++Q+S+ +              A
Sbjct: 648 VPVELK-----PAQ------------VQRTRRPYRRRQSQISIPHSATKKPADIDENAPA 690

Query: 631 GLVLHFSRPGAVPSRSDLIKIFSQYGPVXXXXXXXXXXXXXXQVIFKRRMDAEAAFAGAG 690
            ++++F     +P    L K+F  +GP+              +V+F++  DAE A+  AG
Sbjct: 691 EIIMNFFETDTIPPEKSLSKMFRHFGPIQELRTEVDREKNRARVVFRKGADAEVAYNSAG 750

Query: 691 KIGALGPALVSFRLS 705
           +    G  +V + LS
Sbjct: 751 RFNIFGTKVVKYELS 765



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.305    0.123    0.329 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 14,184,925
Number of extensions: 591450
Number of successful extensions: 1982
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2001
Number of HSP's successfully gapped: 4
Length of query: 724
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 618
Effective length of database: 8,200,473
Effective search space: 5067892314
Effective search space used: 5067892314
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 115 (48.9 bits)