BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0270000 Os11g0270000|J100043N02
(250 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0270000 Conserved hypothetical protein 419 e-117
Os11g0275600 186 1e-47
Os11g0275800 92 4e-19
Os11g0269900 Enoyl-CoA hydratase/isomerase domain containin... 72 4e-13
>Os11g0270000 Conserved hypothetical protein
Length = 250
Score = 419 bits (1077), Expect = e-117, Method: Compositional matrix adjust.
Identities = 210/250 (84%), Positives = 210/250 (84%)
Query: 1 MTMSSFCEWAKTDDGVFHLKLTGVDGHHYLTKEALHELRQKLAEIRELASSSPEPCRGLI 60
MTMSSFCEWAKTDDGVFHLKLTGVDGHHYLTKEALHELRQKLAEIRELASSSPEPCRGLI
Sbjct: 1 MTMSSFCEWAKTDDGVFHLKLTGVDGHHYLTKEALHELRQKLAEIRELASSSPEPCRGLI 60
Query: 61 XXXXXXXXXXXXXXGSFCDGIDHKSLRANMAAPVAEQARVLADGMAAVVRELLAMPMPTV 120
GSFCDGIDHKSLRANMAAPVAEQARVLADGMAAVVRELLAMPMPTV
Sbjct: 61 TSSSSSSSPSSPTTGSFCDGIDHKSLRANMAAPVAEQARVLADGMAAVVRELLAMPMPTV 120
Query: 121 CXXXXXXXXXXXXXXXXXXXXXXXXXXYYKLGNVEDGVAVPPHVAALVREKTDRWYTLTT 180
C YYKLGNVEDGVAVPPHVAALVREKTDRWYTLTT
Sbjct: 121 CAATGGAASLGLALALAHDDLVVLSDAYYKLGNVEDGVAVPPHVAALVREKTDRWYTLTT 180
Query: 181 LKSRPRTGSWMRRWYFADGEAASRDGVVREAERLVGEWPAAGEDGKVHAETRRQLYRESW 240
LKSRPRTGSWMRRWYFADGEAASRDGVVREAERLVGEWPAAGEDGKVHAETRRQLYRESW
Sbjct: 181 LKSRPRTGSWMRRWYFADGEAASRDGVVREAERLVGEWPAAGEDGKVHAETRRQLYRESW 240
Query: 241 EAVCAIVHDE 250
EAVCAIVHDE
Sbjct: 241 EAVCAIVHDE 250
>Os11g0275600
Length = 285
Score = 186 bits (472), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 114/247 (46%), Positives = 135/247 (54%), Gaps = 25/247 (10%)
Query: 3 MSSFCEWAKTDDGVFHLKLTGVDGHHYLTKEALHELRQKLAEIRELASSSPEPC----RG 58
MSSFC W + D GV+ L L G D HHYLT E + EL + LA IRE A P R
Sbjct: 1 MSSFCTWTEQD-GVYRLTLAGDDDHHYLTGETVDELTRTLAAIRERAMDQKPPAGAAARA 59
Query: 59 LIXXXXXXXXXXXXXXGSFCDGIDHKSLRANMAAPVAEQARVLADGMAAVVRELLAMPMP 118
LI GSFCDG+D++ A+P +QA ADGM AV+RELLAMPM
Sbjct: 60 LITASSA---------GSFCDGVDYER-----ASPREKQAA--ADGMVAVIRELLAMPML 103
Query: 119 TVCXXXXXXXXXXXXXXXXXXXXXXXXXXYYKLGNVEDGVAVPPHVAALVREKTDRWYTL 178
TVC Y LG VE GV VPPHV AL+R+KTDRWYTL
Sbjct: 104 TVCAATGGARSLGLVLALAHDDVVVVSGGRYHLGMVERGVVVPPHVGALLRQKTDRWYTL 163
Query: 179 TTLKSRPR--TGSWMRRWYFADGEAASRDGVVREAERLVGEWPAAGEDGKVHAETRRQLY 236
PR GS++++W DG A RDGV+ EAER+ G W G+DG+ HA RR L
Sbjct: 164 GARVMAPRHDQGSYLKQWKVVDGVAGDRDGVLAEAERVAGAWN--GDDGEAHAGMRRLLC 221
Query: 237 RESWEAV 243
R+SWEAV
Sbjct: 222 RDSWEAV 228
>Os11g0275800
Length = 235
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 117/251 (46%), Gaps = 26/251 (10%)
Query: 6 FCEWAKTDDGVFHLKLTGVD-GHHYLTKEALHELRQKLAEIRELASSSPEPCRGLIXXXX 64
FC + + DD +F L LTG + GH+YLT+++L EL++ LA IR A+ S RGL+
Sbjct: 3 FCTYKEKDD-IFKLTLTGGNSGHNYLTEKSLKELKETLATIRGKATPS---SRGLV---- 54
Query: 65 XXXXXXXXXXGSFCDGIDHKSLRANMAAPVAEQARVLADGMAAVVRELLAMPMPTVCXXX 124
SFCDGID+ S P E+ L GMA VVRELL MP PTV
Sbjct: 55 ----TICSGKSSFCDGIDYTS----SPPPAVEE---LIRGMAEVVRELLGMPFPTVAAVG 103
Query: 125 XXXXXXXXXXXXXX-XXXXXXXXXYYKLGNVEDGV--AVPPHVAALVREKTD--RWYTLT 179
+ V +G AVPP++ AL+R+K+ + +
Sbjct: 104 GDVRSSLALALVLAHDDVAVLKKVKIEAREVVEGRHDAVPPYLGALLRDKSSYPQMSSDL 163
Query: 180 TLKSRPRTGSWMRRWYFADGEAASRDGVVREAERLVGEWPAAGEDGKVHAETRRQL-YRE 238
L+S G ++ WY + + + A ++ E DG+ + TR+ L + E
Sbjct: 164 VLRSETMAGERLKYWYLIERVCDDQWELKGHAINMIKEVFGDERDGEAYVTTRKSLVFSE 223
Query: 239 SWEAVCAIVHD 249
SW+AV ++ +
Sbjct: 224 SWKAVSELLKN 234
>Os11g0269900 Enoyl-CoA hydratase/isomerase domain containing protein
Length = 248
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 99/245 (40%), Gaps = 34/245 (13%)
Query: 6 FCEWAKTDDGVFHLKLTGVDGHHYLTKEALHELRQKLAEIRELASSSPEPCRGLIXXXXX 65
FC DG+F L + DGH YLT EA+ +L L +R+ RGL+
Sbjct: 3 FCTVQSPIDGIFVLTMASSDGHQYLTDEAIGDLIASLTAVRDTPG-----LRGLV----- 52
Query: 66 XXXXXXXXXGSFCDGIDHKSLRA---NMAAPVAEQARVLADGMAAVVRELLAMPMPTVCX 122
GSFCDG+DH + R +AA V E VVR LL MP PT
Sbjct: 53 ----TTSRLGSFCDGVDHDAARQPDEQVAARVGE-----------VVRLLLEMPAPTAAA 97
Query: 123 XXXXXXXXXXXXXXXXXXXXXXXXXYYKLGNVEDGVAVPPHVAALVREKT--DRWYTLTT 180
L +P +VAAL+R+K R L
Sbjct: 98 VNGDATSLGLALALAHDHCVVWEGAAVALPEARRRRPLPGYVAALLRDKVAYARLRKLLM 157
Query: 181 LKSRPRTGS-WMRRWYFA-DGEAASRDGVVREAERLVGEWPAAGEDGKVHAETRRQLYRE 238
L++ TG + WY A D AA R+ V EA L+ E G GK +A R+ ++ E
Sbjct: 158 LRAEACTGKELVGTWYSANDPAAADREVVAAEACELL-EGIEVGS-GKNYATARQAMWPE 215
Query: 239 SWEAV 243
S AV
Sbjct: 216 SCAAV 220
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.133 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,923,310
Number of extensions: 273836
Number of successful extensions: 842
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 834
Number of HSP's successfully gapped: 4
Length of query: 250
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 152
Effective length of database: 11,918,829
Effective search space: 1811662008
Effective search space used: 1811662008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)