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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0269900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Enoyl-CoA hydratase/isomerase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.31 (0.0546) R2 : 0.0926
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.28 (0.832) R2dE : 0.0803 R2E : 0.0794
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.261 (0.115) R2dN8 : 0.0132 R2N8 : 0.0123
σ : 1.03
deviance : 485
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 3.634
memory length : 111
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 14.9
open length of G : 0.319

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
483.37 1.03 3.37 0.17 0.2 21.8 -0.00648 49.9 -0.266 2.47 1.06 89 15 1
504.26 1.05 3.31 0.0664 0.197 3.86 -0.285 -- -0.259 2.54 1.06 89 15 1
483.37 1.02 3.37 0.167 0.199 21.7 -- 49.5 -0.266 2.51 1.067 88 15 1
484.99 1.03 3.28 0.175 0.237 4.76 -- -- -0.149 2.73 4.174 137 14.9 0.366
485.52 1.03 3.37 0.172 -- 21.5 -- 49.4 -0.262 -- 1.091 92 15 0.993
526.75 1.08 3.32 -0.0234 0.132 -- -0.0573 -- -0.291 1.06 -- -- -- --
526.76 1.07 3.32 -0.0214 0.133 -- -- -- -0.291 1.19 -- -- -- --
485 1.03 3.31 -4.68e-06 -- 5.28 -- -- -0.26 -- 3.633 111 14.9 0.319
483.18 1.02 3.3 -- 0.223 5.33 -- -- -0.184 2.57 3.617 135 14.9 0.394
527.85 1.07 3.31 -0.0163 -- -- -- -- -0.288 -- -- -- -- --
526.77 1.07 3.31 -- 0.132 -- -- -- -0.289 1.19 -- -- -- --
485 1.03 3.31 -- -- 5.28 -- -- -0.261 -- 3.634 111 14.9 0.319
527.86 1.07 3.31 -- -- -- -- -- -0.286 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 483.84 radiation 1.0 90 < th dose dependent rect. 15 1
7 486.34 radiation 1.0 90 < th dose independent rect. 14 2
9 489.59 radiation 1.0 30 < th dose dependent rect. 11 5
39 494.92 radiation 1.0 90 < th dose independent rect. 10 6
42 495.20 radiation 1.0 10 < th dose independent rect. 11 5
89 499.36 wind 7.0 90 > th dose dependent rect. 3 6
91 499.47 temperature 25.0 90 < th dose independent rect. 14 1
110 501.01 wind 7.0 90 > th dose dependent rect. 14 1
112 501.68 wind 7.0 90 > th dose independent rect. 3 6
116 501.91 temperature 20.0 4320 > th dose independent rect. 21 2
118 502.16 temperature 30.0 30 < th dose dependent rect. 15 2
120 502.26 temperature 20.0 4320 < th dose independent rect. 21 2
124 502.74 temperature 30.0 270 < th dose dependent rect. 22 19
139 503.28 temperature 25.0 270 < th dose dependent rect. 10 6
143 503.55 humidity 90.0 90 > th dose independent rect. 8 2
150 503.80 temperature 25.0 270 < th dose independent rect. 11 5
153 503.87 wind 7.0 90 > th dose independent rect. 2 8
156 503.91 wind 7.0 10 > th dose dependent rect. 16 1
168 504.20 wind 7.0 90 > th dose independent rect. 14 1
172 504.27 humidity 90.0 90 > th dose dependent rect. 8 2
176 504.36 temperature 15.0 30 > th dose dependent rect. 5 23
183 504.63 wind 5.0 10 > th dose independent rect. 10 1
187 504.63 wind 5.0 10 > th dose dependent rect. 10 1
203 504.98 humidity 90.0 1440 > th dose independent rect. 4 1
205 505.00 wind 7.0 90 > th dose dependent rect. 8 1
211 505.13 temperature 10.0 90 > th dose dependent rect. 16 23
212 505.14 humidity 60.0 30 > th dose dependent rect. 15 2
217 505.18 temperature 25.0 720 < th dose dependent rect. 4 19
232 505.51 wind 7.0 90 > th dose independent rect. 8 1
260 505.84 temperature 25.0 1440 < th dose independent rect. 15 7
265 505.92 temperature 25.0 1440 < th dose independent rect. 14 13
269 505.97 temperature 30.0 270 < th dose dependent rect. 11 22
279 506.04 temperature 30.0 10 < th dose dependent rect. 22 22
293 506.19 humidity 90.0 1440 < th dose independent rect. 3 2
319 506.26 temperature 15.0 10 > th dose dependent rect. 17 23
322 506.31 temperature 25.0 720 < th dose dependent sin 23 NA
332 506.35 wind 9.0 90 > th dose dependent rect. 21 13
339 506.39 wind 9.0 90 > th dose dependent rect. 19 15
341 506.40 temperature 25.0 1440 < th dose independent sin 16 NA
360 506.55 temperature 25.0 1440 < th dose independent rect. 18 1
367 506.57 temperature 25.0 1440 > th dose independent rect. 18 1
375 506.61 temperature 25.0 1440 < th dose independent rect. 11 16
379 506.62 temperature 25.0 1440 > th dose independent rect. 11 14
400 506.74 temperature 30.0 90 < th dose dependent rect. 14 21
425 506.85 temperature 30.0 30 < th dose dependent rect. 4 23
436 506.91 temperature 25.0 1440 > th dose independent sin 17 NA
476 507.05 temperature 30.0 10 < th dose dependent rect. 15 21
509 507.16 temperature 10.0 270 > th dose dependent rect. 14 23
607 507.59 temperature 30.0 10 < th dose dependent rect. 18 23
655 507.78 temperature 30.0 270 < th dose dependent no NA NA
694 507.92 temperature 10.0 270 > th dose dependent rect. 2 23
700 507.97 precipitation 0.1 14400 > th dose dependent rect. 20 3
768 508.31 temperature 25.0 1440 < th dose dependent rect. 19 2
769 508.31 temperature 20.0 270 < th dose dependent rect. 19 12
783 508.34 temperature 25.0 90 < th dose dependent sin 23 NA
787 508.35 precipitation 0.1 14400 > th dose dependent rect. 1 5
798 508.39 temperature 25.0 1440 < th dose dependent rect. 18 4
799 508.39 temperature 20.0 270 < th dose dependent rect. 21 10
808 508.42 humidity 80.0 30 > th dose dependent rect. 14 3
820 508.45 temperature 25.0 720 < th dose independent rect. 4 17
836 508.51 humidity 70.0 90 > th dose independent rect. 14 1
838 508.52 radiation 20.0 90 > th dose independent rect. 6 1
855 508.52 radiation 20.0 90 > th dose dependent rect. 6 1
881 508.56 temperature 30.0 10 < th dose dependent rect. 1 23
885 508.58 temperature 25.0 90 > th dose independent rect. 6 21
887 508.59 precipitation 0.1 14400 < th dose independent rect. 1 5
888 508.59 precipitation 0.1 14400 < th dose dependent rect. 1 5
890 508.59 temperature 30.0 10 < th dose dependent rect. 7 23
923 508.72 precipitation 0.1 14400 > th dose independent rect. 1 5
937 508.75 temperature 25.0 720 < th dose independent rect. 4 12
946 508.78 wind 3.0 43200 > th dose independent rect. 1 1
953 508.79 precipitation 0.1 14400 > th dose dependent rect. 24 7
981 508.84 temperature 30.0 90 < th dose dependent rect. 14 19