BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0269900 Os11g0269900|J100076G10
(248 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0269900 Enoyl-CoA hydratase/isomerase domain containin... 430 e-121
Os11g0275800 108 3e-24
Os11g0270201 104 5e-23
Os11g0275600 94 1e-19
Os11g0270000 Conserved hypothetical protein 72 5e-13
>Os11g0269900 Enoyl-CoA hydratase/isomerase domain containing protein
Length = 248
Score = 430 bits (1106), Expect = e-121, Method: Compositional matrix adjust.
Identities = 216/248 (87%), Positives = 216/248 (87%)
Query: 1 MGFCTVQSPIDGIFVLTMASSDGHQYLTDEAIGDLIASLTAVRDTPGLRGLVTTSRLGSF 60
MGFCTVQSPIDGIFVLTMASSDGHQYLTDEAIGDLIASLTAVRDTPGLRGLVTTSRLGSF
Sbjct: 1 MGFCTVQSPIDGIFVLTMASSDGHQYLTDEAIGDLIASLTAVRDTPGLRGLVTTSRLGSF 60
Query: 61 CDGVDHDAARQPDEQVAARVGEVVRLLLEMPAPTAAAVNGDATSLGLALALAHDHCVVWE 120
CDGVDHDAARQPDEQVAARVGEVVRLLLEMPAPTAAAVNGDATSLGLALALAHDHCVVWE
Sbjct: 61 CDGVDHDAARQPDEQVAARVGEVVRLLLEMPAPTAAAVNGDATSLGLALALAHDHCVVWE 120
Query: 121 GXXXXXXXXXXXXXXXGYVAALLRDKVAYARLRKLLMLRAEACTGKELVGTWYSANDPXX 180
G GYVAALLRDKVAYARLRKLLMLRAEACTGKELVGTWYSANDP
Sbjct: 121 GAAVALPEARRRRPLPGYVAALLRDKVAYARLRKLLMLRAEACTGKELVGTWYSANDPAA 180
Query: 181 XXXXXXXXXXXXXXXGIEVGSGKNYATARQAMWPESCAAVGMEITRPRRPSSPEQILHVR 240
GIEVGSGKNYATARQAMWPESCAAVGMEITRPRRPSSPEQILHVR
Sbjct: 181 ADREVVAAEACELLEGIEVGSGKNYATARQAMWPESCAAVGMEITRPRRPSSPEQILHVR 240
Query: 241 LTVQSFPS 248
LTVQSFPS
Sbjct: 241 LTVQSFPS 248
>Os11g0275800
Length = 235
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/181 (41%), Positives = 101/181 (55%), Gaps = 10/181 (5%)
Query: 1 MGFCTVQSPIDGIFVLTMASSD-GHQYLTDEAIGDLIASLTAVRD--TPGLRGLVTT-SR 56
MGFCT + D IF LT+ + GH YLT++++ +L +L +R TP RGLVT S
Sbjct: 1 MGFCTYKEK-DDIFKLTLTGGNSGHNYLTEKSLKELKETLATIRGKATPSSRGLVTICSG 59
Query: 57 LGSFCDGVDHDAARQPD-EQVAARVGEVVRLLLEMPAPTAAAVNGDA-TSLGLALALAHD 114
SFCDG+D+ ++ P E++ + EVVR LL MP PT AAV GD +SL LAL LAHD
Sbjct: 60 KSSFCDGIDYTSSPPPAVEELIRGMAEVVRELLGMPFPTVAAVGGDVRSSLALALVLAHD 119
Query: 115 HCVVWEGXXXXXXXXXX--XXXXXGYVAALLRDKVAYARLRKLLMLRAEACTGKELVGTW 172
V + Y+ ALLRDK +Y ++ L+LR+E G+ L W
Sbjct: 120 DVAVLKKVKIEAREVVEGRHDAVPPYLGALLRDKSSYPQMSSDLVLRSETMAGERL-KYW 178
Query: 173 Y 173
Y
Sbjct: 179 Y 179
>Os11g0270201
Length = 244
Score = 104 bits (260), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 88/240 (36%), Positives = 109/240 (45%), Gaps = 21/240 (8%)
Query: 1 MGFCTVQSPIDGIFVLTMAS-SDGHQYLTDEAIGDLIASLTAVRD--TPGLRGLVTT--- 54
MGFC + S +G+F LT+ G Y T++ I +L L VR P +GLVTT
Sbjct: 1 MGFCQL-STKNGVFFLTLGGHGGGENYRTEQFIAELEQKLKEVRGHARPSSKGLVTTFAA 59
Query: 55 SRLGSFCDGVDHDAARQPDEQVAA--RVGEVVRLLLEMPAPTAAAVNGDA-TSLGLALAL 111
GSFCD VD+ A R E VR L +MP PTAAAV GD +SL LAL L
Sbjct: 60 GEGGSFCDDVDNGGTSAAATAELAAYRTAEAVRALFDMPFPTAAAVAGDVRSSLALALVL 119
Query: 112 AHDHCVVWEGXXXXXXXXXXXXXXXG----------YVAALLRDKVAYARLRKLLMLRAE 161
AHD VW+ G YVAALLRDK Y +R L+LR+E
Sbjct: 120 AHDDMAVWKEATFEAPEVRLRRDDGGGGDLPPAPPPYVAALLRDKAPYPMMRSKLVLRSE 179
Query: 162 ACTGKELVGTWYSANDPXXXXXXXXXXXXXXXXXGI-EVGSGKNYATARQAMWPESCAAV 220
A G G WY + I +V G+ Y R++ +PES AV
Sbjct: 180 AMDGSTFGGYWYMTDSRCDGREEVTGEAAGIVTTSIGKVRDGEAYVATRKSFFPESWKAV 239
>Os11g0275600
Length = 285
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/154 (40%), Positives = 80/154 (51%), Gaps = 11/154 (7%)
Query: 3 FCTVQSPIDGIFVLTMASSDGHQYLTDEAIGDLIASLTAVRDTP---------GLRGLVT 53
FCT + DG++ LT+A D H YLT E + +L +L A+R+ R L+T
Sbjct: 4 FCT-WTEQDGVYRLTLAGDDDHHYLTGETVDELTRTLAAIRERAMDQKPPAGAAARALIT 62
Query: 54 TSRLGSFCDGVDHDAARQPDEQVAAR-VGEVVRLLLEMPAPTAAAVNGDATSLGLALALA 112
S GSFCDGVD++ A ++Q AA + V+R LL MP T A G A SLGL LALA
Sbjct: 63 ASSAGSFCDGVDYERASPREKQAAADGMVAVIRELLAMPMLTVCAATGGARSLGLVLALA 122
Query: 113 HDHCVVWEGXXXXXXXXXXXXXXXGYVAALLRDK 146
HD VV G +V ALLR K
Sbjct: 123 HDDVVVVSGGRYHLGMVERGVVVPPHVGALLRQK 156
>Os11g0270000 Conserved hypothetical protein
Length = 250
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 105/244 (43%), Gaps = 32/244 (13%)
Query: 3 FCTVQSPIDGIFVLTMASSDGHQYLTDEAIGDLIASLTAVRDTPG-----LRGLVTTSRL 57
FC DG+F L + DGH YLT EA+ +L L +R+ RGL+T+S
Sbjct: 6 FCEWAKTDDGVFHLKLTGVDGHHYLTKEALHELRQKLAEIRELASSSPEPCRGLITSSSS 65
Query: 58 ---------GSFCDGVDHDAARQPDEQVAARVGE-----------VVRLLLEMPAPTAAA 97
GSFCDG+DH + R +AA V E VVR LL MP PT A
Sbjct: 66 SSSPSSPTTGSFCDGIDHKSLRA---NMAAPVAEQARVLADGMAAVVRELLAMPMPTVCA 122
Query: 98 VNGDATSLGLALALAHDHCVVWEGXXXXXXXXXXXXXXXGYVAALLRDKVAYARLRKLLM 157
G A SLGLALALAHD VV +VAAL+R+K R L
Sbjct: 123 ATGGAASLGLALALAHDDLVVLSDAYYKLGNVEDGVAVPPHVAALVREKT--DRWYTLTT 180
Query: 158 LRAEACTGKELVGTWYSANDPXXXXXXXXXXXXXXXXXGIEVGS-GKNYATARQAMWPES 216
L++ TG + WY A+ G GK +A R+ ++ ES
Sbjct: 181 LKSRPRTGS-WMRRWYFADGEAASRDGVVREAERLVGEWPAAGEDGKVHAETRRQLYRES 239
Query: 217 CAAV 220
AV
Sbjct: 240 WEAV 243
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,308,719
Number of extensions: 250496
Number of successful extensions: 818
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 808
Number of HSP's successfully gapped: 5
Length of query: 248
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 150
Effective length of database: 11,918,829
Effective search space: 1787824350
Effective search space used: 1787824350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)