BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0269900 Os11g0269900|J100076G10
         (248 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G14440.1  | chr4:8306946-8307662 REVERSE LENGTH=239             59   2e-09
AT1G65520.1  | chr1:24361171-24361893 REVERSE LENGTH=241           49   3e-06

>AT4G14440.1 | chr4:8306946-8307662 REVERSE LENGTH=239
          Length = 238

 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 100/232 (43%), Gaps = 18/232 (7%)

Query: 4   CTVQSPIDGIFVLTMASSDGHQYLTDEAIGDLIASLTAVRDTPGLRG--LVTTSRLGSFC 61
           CT++   D +F+LT+   D H++  D      + SL     +   +G  L+TT     F 
Sbjct: 2   CTLEKRGD-LFLLTLTGEDEHRFHPDTIAS--VLSLLEQAKSQSTKGSVLITTGHGKFFS 58

Query: 62  DGVDHDAARQPDEQVAARVGEVVR-------LLLEMPAPTAAAVNGDATSLGLALALAHD 114
           +G D   A+        R+ ++V+        LL++P PT AA+NG A + GL  AL+HD
Sbjct: 59  NGFDLAWAQSAGHGAIKRMHQMVKSFKPVLAALLDLPMPTIAALNGHAAASGLMFALSHD 118

Query: 115 HCVVWEGXXXXXXXXXXXXX-XXGYVAALLRDKVAYARLRKLLMLRAEACTGKELVGTWY 173
           +  + +                  Y +AL+  KV     R+ L+L  +   G+E V    
Sbjct: 119 YVFMRKDRGVLYMSEVDIGLPVPDYFSALVVAKVGSGIARRELLLSGKKLKGEEAVALGI 178

Query: 174 ---SANDPXXXXXXXXXXXXXXXXXGIEVGSGKNYATARQAMWPESCAAVGM 222
              +A+D                    +  +G+ YAT R++++PE C  V +
Sbjct: 179 VDSAAHDSAEGVVEATVSLGESLAA--KKWNGEVYATIRKSLYPELCRMVDL 228



>AT1G65520.1 | chr1:24361171-24361893 REVERSE LENGTH=241
          Length = 240

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 7/121 (5%)

Query: 3   FCTVQSPIDGIFVLTMASSDGHQYLTDEAIGDLIASLTAVRDTPGLRG--LVTTSRLGSF 60
            C+++   D +F+L + + DG   L    +  L +++  +R  P      L+TTS    F
Sbjct: 1   MCSLEKR-DRLFILKL-TGDGEHRLNPTLLDSLRSTINQIRSDPSFSQSVLITTSDGKFF 58

Query: 61  CDGVDHDAAR-QPDEQVA--ARVGEVVRLLLEMPAPTAAAVNGDATSLGLALALAHDHCV 117
            +G D   A   P   V   A++  +V  L+ +P PT AAV G A++ G  LA++HD+ +
Sbjct: 59  SNGYDLALAESNPSLSVVMDAKLRSLVADLISLPMPTIAAVTGHASAAGCILAMSHDYVL 118

Query: 118 V 118
           +
Sbjct: 119 M 119



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,330,798
Number of extensions: 136029
Number of successful extensions: 256
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 257
Number of HSP's successfully gapped: 3
Length of query: 248
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 152
Effective length of database: 8,474,633
Effective search space: 1288144216
Effective search space used: 1288144216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)