BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0265200 Os11g0265200|Os11g0265200
         (431 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0265200  Four-helical cytokine family protein                743   0.0  
Os11g0264700  Cyclin-like F-box domain containing protein         202   3e-52

>Os11g0265200 Four-helical cytokine family protein
          Length = 431

 Score =  743 bits (1919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/403 (90%), Positives = 364/403 (90%)

Query: 29  DTVIXXXXXXXXXXXXXXSTRLRDAAGDDALWRRFCXXXXXXXXXXXXXGRALPSFKDAY 88
           DTVI              STRLRDAAGDDALWRRFC             GRALPSFKDAY
Sbjct: 29  DTVIAKAGARQAAALACASTRLRDAAGDDALWRRFCADDLALHAPLAPDGRALPSFKDAY 88

Query: 89  KVWLESFGMYPLPLVRRVKIFWSSLKSWLSENFPEAHKTLNKGVSEAQIQSAEDDLGFKL 148
           KVWLESFGMYPLPLVRRVKIFWSSLKSWLSENFPEAHKTLNKGVSEAQIQSAEDDLGFKL
Sbjct: 89  KVWLESFGMYPLPLVRRVKIFWSSLKSWLSENFPEAHKTLNKGVSEAQIQSAEDDLGFKL 148

Query: 149 PLPTKLLYRFCNGQLPLSEHHHENMRMAHLGIIGGYVFYDHLINVHLSPLEQIVEETKEF 208
           PLPTKLLYRFCNGQLPLSEHHHENMRMAHLGIIGGYVFYDHLINVHLSPLEQIVEETKEF
Sbjct: 149 PLPTKLLYRFCNGQLPLSEHHHENMRMAHLGIIGGYVFYDHLINVHLSPLEQIVEETKEF 208

Query: 209 YREFYDQDDQLYVGTINLQDGEMLPCVPKSLIRPTNTDMPQDGXXXXXXXXXXXXQNGMI 268
           YREFYDQDDQLYVGTINLQDGEMLPCVPKSLIRPTNTDMPQDG            QNGMI
Sbjct: 209 YREFYDQDDQLYVGTINLQDGEMLPCVPKSLIRPTNTDMPQDGLLLWLEEHLRRLQNGMI 268

Query: 269 KIRMLKTSRYISLFPEASPSCTSAMTNGVKVRASAVFAPEHPESRRPGAKCLYAYSIRLS 328
           KIRMLKTSRYISLFPEASPSCTSAMTNGVKVRASAVFAPEHPESRRPGAKCLYAYSIRLS
Sbjct: 269 KIRMLKTSRYISLFPEASPSCTSAMTNGVKVRASAVFAPEHPESRRPGAKCLYAYSIRLS 328

Query: 329 VPEACMLGGVYYSSCQLYSRHWIIRWRDRVVSDVNGEGVIGKYPLLTTGQEEFVYESCTP 388
           VPEACMLGGVYYSSCQLYSRHWIIRWRDRVVSDVNGEGVIGKYPLLTTGQEEFVYESCTP
Sbjct: 329 VPEACMLGGVYYSSCQLYSRHWIIRWRDRVVSDVNGEGVIGKYPLLTTGQEEFVYESCTP 388

Query: 389 LPDSPGSVEGSFTFVPGKLSRPEGKPFEVTVAAFPLEIPEYIF 431
           LPDSPGSVEGSFTFVPGKLSRPEGKPFEVTVAAFPLEIPEYIF
Sbjct: 389 LPDSPGSVEGSFTFVPGKLSRPEGKPFEVTVAAFPLEIPEYIF 431



>Os11g0264700 Cyclin-like F-box domain containing protein
          Length = 322

 Score =  202 bits (515), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 120/269 (44%), Positives = 151/269 (56%), Gaps = 24/269 (8%)

Query: 50  LRDAAGDDALWRRFCXXXXXXXXXXXXXGRALPSFKDAYKVWLESFGMYPLPLVRRVKIF 109
           LR AA  +ALWR FC                LPSFKDAYK W +SFGMYPLPLV+RVKIF
Sbjct: 47  LRAAASGEALWRHFCSDDFALDAPLAPGDLPLPSFKDAYKAWFQSFGMYPLPLVKRVKIF 106

Query: 110 WSSLKSWLSENFPEAHKTLNKGVSEAQIQSAEDDLGFKLPLPTKLLYRFCNGQLPLSEHH 169
           WSS ++WL E FPE  +TL +GVSEA+I  AE +LG  LP+PTKLLYRFCNGQL     H
Sbjct: 107 WSSFRAWLCEYFPEGLRTLGEGVSEAEIAVAECNLGLVLPMPTKLLYRFCNGQL-----H 161

Query: 170 HENMRMAHLGIIGGYVFYDHLINVHLSPLEQ---------IVEETKEFYREFYDQD---D 217
                    G++GGY +      V L PL           IV  T  F  + +  D    
Sbjct: 162 IGRGEEVSYGVMGGYDYVHQRYTVRLLPLAHHAVQKNSNYIVVATSCFGEKIFLLDCASG 221

Query: 218 QLYVGTINL-QDGEMLPCVPKSLIRPTNTD---MPQDGXXXXXXXXXXXXQNGMIKIRML 273
           +LYVGT    ++ E++ CVPK+ IR    D   MPQDG            Q+G+IK++  
Sbjct: 222 RLYVGTKYWNEEREIMACVPKATIRLAVDDDHGMPQDGFLLWLEEHLSRLQDGLIKVQSC 281

Query: 274 K---TSRYISLFPEASPSCTSAMTNGVKV 299
           K    +R+ISL+P   P C+SA  +G+KV
Sbjct: 282 KFPMLARHISLYPVQLPYCSSASMHGIKV 310



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.138    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,598,496
Number of extensions: 579304
Number of successful extensions: 1050
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1046
Number of HSP's successfully gapped: 2
Length of query: 431
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 327
Effective length of database: 11,605,545
Effective search space: 3795013215
Effective search space used: 3795013215
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)