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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0265200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Four-helical cytokine family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.1 (0.0145) R2 : 0.00138
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0243 (0.0306) R2dN8 : 0.00179 R2N8 : 0.00138
σ : 0.274
deviance : 34.4
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
15.29 0.184 13.1 -0.692 0.117 -0.182 -0.0626 2.65 -0.0923 19.2 10 1646 -- --
20.62 0.213 13.1 -0.498 0.283 0.18 -1.07 -- -0.0226 13.8 9.987 444 -- --
15.29 0.182 13.1 -0.69 0.113 -0.182 -- 2.65 -0.0907 19.4 9.999 1655 -- --
25.1 0.235 13.1 -0.531 0.28 0.177 -- -- -0.0287 13.9 9.987 444 -- --
15.92 0.186 13.1 -0.676 -- -0.178 -- 2.67 -0.0847 -- 10 1708 -- --
21.67 0.218 13.1 -0.498 0.119 -- -1.1 -- -0.0255 14.4 -- -- -- --
25.63 0.237 13.1 -0.527 0.155 -- -- -- -0.0308 16.8 -- -- -- --
25.41 0.235 13.1 -0.53 -- -0.182 -- -- -0.0427 -- 10 602 -- --
32.54 0.267 13.1 -- 0.272 0.158 -- -- 0.0302 14.1 9.987 444 -- --
26.9 0.242 13.1 -0.533 -- -- -- -- -0.0348 -- -- -- -- --
32.96 0.269 13.1 -- 0.165 -- -- -- 0.0279 16.7 -- -- -- --
32.91 0.267 13.1 -- -- -0.151 -- -- -0.0187 -- 10 492 -- --
34.4 0.274 13.1 -- -- -- -- -- 0.0243 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 14.59 radiation 10.0 1440 < th dose independent rect. 15 16
2 14.68 radiation 10.0 1440 < th dose independent sin 13 NA
15 15.09 radiation 10.0 1440 < th dose independent rect. 15 4
17 15.09 radiation 10.0 1440 < th dose independent rect. 15 10
27 15.13 radiation 10.0 1440 < th dose independent rect. 16 1
31 15.17 radiation 10.0 1440 < th dose independent rect. 18 9
34 15.20 radiation 40.0 14400 < th dose independent rect. 4 4
39 15.22 radiation 40.0 14400 < th dose independent rect. 1 7
55 15.26 radiation 10.0 1440 < th dose independent rect. 18 7
58 15.28 radiation 40.0 14400 < th dose independent rect. 21 11
64 15.31 radiation 10.0 1440 < th dose independent rect. 18 2
83 15.45 radiation 40.0 14400 < th dose independent rect. 17 15
84 15.45 radiation 40.0 1440 < th dose dependent rect. 18 2
101 15.57 radiation 10.0 1440 < th dose dependent rect. 15 20
102 15.58 radiation 10.0 720 < th dose independent rect. 22 10
111 15.61 radiation 10.0 1440 < th dose dependent sin 12 NA
112 15.62 radiation 10.0 720 < th dose independent rect. 5 21
133 15.65 temperature 15.0 43200 < th dose dependent rect. 3 5
137 15.66 temperature 15.0 43200 < th dose dependent rect. 4 3
143 15.67 radiation 1.0 1440 > th dose dependent sin 12 NA
151 15.68 temperature 15.0 43200 < th dose dependent rect. 2 14
156 15.69 temperature 15.0 43200 < th dose dependent rect. 2 12
165 15.70 radiation 1.0 1440 > th dose dependent rect. 18 1
184 15.71 radiation 30.0 1440 < th dose independent rect. 16 11
199 15.72 radiation 30.0 14400 > th dose independent rect. 16 16
212 15.74 radiation 30.0 1440 < th dose independent rect. 16 9
225 15.75 radiation 10.0 720 < th dose independent rect. 5 18
228 15.75 radiation 10.0 720 < th dose independent rect. 20 23
229 15.75 temperature 15.0 43200 < th dose dependent sin 3 NA
240 15.76 radiation 10.0 720 < th dose independent rect. 20 21
286 15.80 atmosphere 1015.0 43200 > th dose independent rect. 19 1
300 15.81 radiation 1.0 1440 > th dose dependent rect. 16 16
344 15.85 temperature 15.0 43200 < th dose dependent rect. 12 20
355 15.86 radiation 10.0 1440 < th dose independent no NA NA
356 15.86 radiation 10.0 1440 < th dose independent rect. 5 14
416 15.86 temperature 15.0 43200 < th dose dependent no NA NA
418 15.86 humidity 60.0 43200 < th dose dependent rect. 19 2
450 15.87 radiation 10.0 720 < th dose independent rect. 20 17
455 15.87 radiation 20.0 1440 < th dose dependent rect. 18 10
458 15.87 temperature 15.0 43200 < th dose dependent rect. 14 17
482 15.87 temperature 15.0 43200 < th dose dependent rect. 7 23
494 15.88 radiation 10.0 1440 < th dose independent rect. 9 23
500 15.88 temperature 15.0 43200 < th dose dependent rect. 20 13
556 15.89 radiation 40.0 1440 > th dose dependent rect. 14 19
602 15.91 humidity 60.0 43200 < th dose dependent rect. 19 9
610 15.92 radiation 10.0 720 < th dose independent rect. 21 13
667 15.94 radiation 30.0 14400 > th dose dependent rect. 16 16
749 15.95 radiation 20.0 1440 < th dose dependent rect. 18 7
765 15.96 radiation 30.0 1440 < th dose independent rect. 16 4
787 15.97 radiation 40.0 1440 < th dose dependent rect. 15 17
793 15.98 radiation 30.0 14400 > th dose independent rect. 7 1
815 15.98 humidity 80.0 43200 > th dose dependent rect. 3 12
847 16.00 radiation 30.0 1440 < th dose independent rect. 16 7
898 16.03 precipitation 0.1 14400 < th dose independent rect. 13 1
903 16.03 precipitation 0.1 14400 < th dose dependent rect. 13 1
943 16.07 precipitation 0.1 14400 > th dose independent rect. 13 1
955 16.07 radiation 40.0 1440 < th dose independent rect. 14 19
960 16.07 radiation 10.0 720 < th dose dependent rect. 22 17
979 16.09 humidity 80.0 43200 > th dose dependent sin 3 NA
987 16.10 temperature 15.0 43200 < th dose independent rect. 5 2