BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0265200 Os11g0265200|Os11g0265200
         (431 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G06110.1  | chr1:1853237-1854938 REVERSE LENGTH=437            356   1e-98

>AT1G06110.1 | chr1:1853237-1854938 REVERSE LENGTH=437
          Length = 436

 Score =  356 bits (914), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 195/414 (47%), Positives = 248/414 (59%), Gaps = 36/414 (8%)

Query: 47  STRLRDAAGDDALWRRFCXXXXXXXXXXXXXGRALPSFKDAYKVWLESFGMYPLPLVRRV 106
           S RL+ +A +++LW  FC             G   PSFK AY++W ESF MYP  LV+RV
Sbjct: 30  SKRLKVSASEESLWSIFCSNDLNISTPLDPHGDPAPSFKRAYQLWRESFRMYPWNLVKRV 89

Query: 107 KIFWSSLKSWLSENFPEAHKTLNKGVSEAQIQSAEDDLGFKLPLPTKLLYRFCNGQLPLS 166
           ++ W +LK WL+ NFPEA  TL KGV+E  +Q  E  L  KLPLPT+LLYRF +GQ    
Sbjct: 90  RLCWDNLKQWLTLNFPEAKATLRKGVTEDDLQEFETSLKVKLPLPTRLLYRFVDGQ---- 145

Query: 167 EHHHENMRMAHLGIIGGYVFYDHLINVHLSPLEQIVEETKE-FYRE--FYDQDD------ 217
           E    N     LG+IGGY  Y H +NV+L PL++++ ETKE F R+  F  + D      
Sbjct: 146 ELSSPNGLDGSLGLIGGYSAYSHDVNVYLLPLKEVMRETKESFMRDLGFSSRLDLIVMAA 205

Query: 218 ----------------QLYVGTINLQDGEMLPCVPKSLIRP---TNTDMPQDGXXXXXXX 258
                           QL+ GT N Q   +LPCVP +L+R    TN D  QD        
Sbjct: 206 SVVASLKIFLLDCTTGQLFTGTSNRQ---LLPCVPDALVRSVHDTNGDQQQDAMLLWLEE 262

Query: 259 XXXXXQNGMIKIRMLKTSRYISLFPEASPSCTSAMTNGVKVRASAVFAPEHPESRRPGAK 318
                Q G I +R     + ISLFPE  P C+ ++TNGV+VRAS+VF PE    R     
Sbjct: 263 HGRRLQTGTINVRQQNNVKSISLFPEIPPLCSVSVTNGVQVRASSVFIPEISNLRDQPPA 322

Query: 319 CLYAYSIRLSV-PEACMLGGVYYSSCQLYSRHWIIRWRDRVVSDVNGEGVIGKYPLLTTG 377
             YAYSIR+S+ PE C+L G ++SSCQLY RHW+IR  + V+ +VNGE VIGKYPLL  G
Sbjct: 323 YWYAYSIRMSLMPEGCILNGTHHSSCQLYWRHWVIRADNEVIDNVNGEAVIGKYPLLQAG 382

Query: 378 QEEFVYESCTPLPDSPGSVEGSFTFVPGKLSRPEGKPFEVTVAAFPLEIPEYIF 431
           +EEFVYESC+  P + GS++GSFTFVPG L  P+G  FEV V  FPLE+P+YIF
Sbjct: 383 EEEFVYESCSSFPTTAGSIDGSFTFVPGSLRDPKGSQFEVKVVEFPLELPDYIF 436



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.138    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,671,902
Number of extensions: 370899
Number of successful extensions: 720
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 717
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 330
Effective length of database: 8,337,553
Effective search space: 2751392490
Effective search space used: 2751392490
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)