BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0256000 Os11g0256000|J065001O05
         (108 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0256000  Acetolactate synthase, small subunit family pr...   221   8e-59
Os02g0608600  Acetolactate synthase, small subunit family pr...   180   2e-46

>Os11g0256000 Acetolactate synthase, small subunit family protein
          Length = 108

 Score =  221 bits (564), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 108/108 (100%), Positives = 108/108 (100%)

Query: 1   KFCLNFQVQDLTHLPFAARELMIIKIAVNTTARRAILDIADIFRAKTVDVSDHTVTLQQL 60
           KFCLNFQVQDLTHLPFAARELMIIKIAVNTTARRAILDIADIFRAKTVDVSDHTVTLQQL
Sbjct: 1   KFCLNFQVQDLTHLPFAARELMIIKIAVNTTARRAILDIADIFRAKTVDVSDHTVTLQQL 60

Query: 61  TGDLDKMVALQRMLEPYGICEVARTGRVALRRESGVDSKYLRGFSLPL 108
           TGDLDKMVALQRMLEPYGICEVARTGRVALRRESGVDSKYLRGFSLPL
Sbjct: 61  TGDLDKMVALQRMLEPYGICEVARTGRVALRRESGVDSKYLRGFSLPL 108



>Os02g0608600 Acetolactate synthase, small subunit family protein
          Length = 340

 Score =  180 bits (457), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 87/102 (85%), Positives = 96/102 (94%), Gaps = 1/102 (0%)

Query: 7   QVQDLTHLPFAARELMIIKIAVNTTARRAILDIADIFRAKTVDVSDHTVTLQQLTGDLDK 66
           +VQD+THLPFA RELM+IK++VNT ARR ILDIA+IFRAK+VDVSDHTVTLQ LTGDLDK
Sbjct: 240 EVQDITHLPFAERELMLIKVSVNTAARRDILDIAEIFRAKSVDVSDHTVTLQ-LTGDLDK 298

Query: 67  MVALQRMLEPYGICEVARTGRVALRRESGVDSKYLRGFSLPL 108
           MVALQR+LEPYGICEVARTGRVAL RESGVDSKYLRG+S PL
Sbjct: 299 MVALQRLLEPYGICEVARTGRVALVRESGVDSKYLRGYSFPL 340




 Score = 92.4 bits (228), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 48/100 (48%), Positives = 68/100 (68%), Gaps = 1/100 (1%)

Query: 6   FQVQDLTHLPFAARELMIIKIAVNTTARRAILDIADIFRAKTVDVSDHTVTLQQLTGDLD 65
            QV+DL+  P   RELM+IKI V    R  ++ + DIFRAK VD+S++T+T+ ++TGD  
Sbjct: 2   LQVEDLSKEPQVERELMLIKINVEPDQRPEVMVLVDIFRAKVVDISENTLTI-EVTGDPG 60

Query: 66  KMVALQRMLEPYGICEVARTGRVALRRESGVDSKYLRGFS 105
           K+VA+QR L  +GI E+ RTG++ALRRE    +    GFS
Sbjct: 61  KIVAVQRNLSKFGIKEICRTGKIALRREKIGATARFWGFS 100



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.327    0.140    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,936,435
Number of extensions: 88518
Number of successful extensions: 245
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 243
Number of HSP's successfully gapped: 3
Length of query: 108
Length of database: 17,035,801
Length adjustment: 76
Effective length of query: 32
Effective length of database: 13,067,537
Effective search space: 418161184
Effective search space used: 418161184
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 149 (62.0 bits)