Os02g0608600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Acetolactate synthase, small subunit family protein.
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Os02g0608600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Acetolactate synthase, small subunit family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 239.26 | 0.727 | 8.53 | -1.87 | 0.793 | -0.0861 | 0.836 | -5.02 | -0.837 | 22.7 | 10 | 1467 | -- | -- |
| 260.39 | 0.752 | 8.56 | -2.31 | 0.719 | -0.824 | 1.46 | -- | -1.15 | 22.4 | 4.801 | 15725 | -- | -- |
| 240.2 | 0.722 | 8.52 | -1.88 | 0.783 | -0.05 | -- | -4.83 | -0.812 | 22.8 | 10 | 1404 | -- | -- |
| 250.73 | 0.737 | 8.59 | -2.8 | 0.658 | -1.27 | -- | -- | -1.3 | 0.462 | 3.684 | 16802 | -- | -- |
| 276.67 | 0.775 | 8.51 | -1.83 | -- | -0.253 | -- | -5.16 | -0.767 | -- | 9.99 | 1381 | -- | -- |
| 282.58 | 0.788 | 8.53 | -2.37 | 0.856 | -- | 0.444 | -- | -0.933 | 23 | -- | -- | -- | -- |
| 283.37 | 0.788 | 8.53 | -2.39 | 0.853 | -- | -- | -- | -0.935 | 23.2 | -- | -- | -- | -- |
| 275.59 | 0.773 | 8.62 | -2.86 | -- | -1.48 | -- | -- | -1.34 | -- | 3.68 | 16926 | -- | -- |
| 406.18 | 0.939 | 8.54 | -- | 0.691 | -1.2 | -- | -- | -1.03 | 0.215 | 20.03 | 9519 | -- | -- |
| 328.83 | 0.847 | 8.51 | -2.37 | -- | -- | -- | -- | -0.928 | -- | -- | -- | -- | -- |
| 433.73 | 0.974 | 8.47 | -- | 0.832 | -- | -- | -- | -0.669 | 23 | -- | -- | -- | -- |
| 412.63 | 0.946 | 8.5 | -- | -- | -1.44 | -- | -- | -1.09 | -- | 10 | 9788 | -- | -- |
| 476.77 | 1.02 | 8.45 | -- | -- | -- | -- | -- | -0.665 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 236.92 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 13 | NA |
| 2 | 237.27 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 14 | 17 |
| 3 | 237.56 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 9 | 238.13 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 11 | 21 |
| 11 | 238.32 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 17 | 3 |
| 13 | 238.36 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 15 | 21 |
| 24 | 238.54 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 17 | 10 |
| 37 | 238.59 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 17 | 7 |
| 52 | 238.84 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 15 | 22 |
| 54 | 239.06 | radiation | 1.0 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 57 | 239.18 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 14 | 20 |
| 77 | 239.60 | radiation | 40.0 | 1440 | < th | dose dependent | sin | 12 | NA |
| 79 | 239.61 | radiation | 1.0 | 1440 | > th | dose dependent | sin | 12 | NA |
| 91 | 239.92 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 24 | 20 |
| 104 | 239.95 | radiation | 10.0 | 1440 | < th | dose dependent | no | NA | NA |
| 105 | 239.95 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 4 | 16 |
| 109 | 239.95 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 4 | 21 |
| 165 | 240.38 | radiation | 10.0 | 1440 | < th | dose independent | sin | 14 | NA |
| 168 | 240.44 | radiation | 20.0 | 1440 | < th | dose independent | sin | 12 | NA |
| 172 | 240.51 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 15 | 5 |
| 173 | 240.52 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 15 | 11 |
| 195 | 240.74 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 15 | 17 |
| 231 | 241.11 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 14 | 23 |
| 250 | 241.20 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 14 | 20 |
| 261 | 241.35 | radiation | 30.0 | 1440 | > th | dose dependent | rect. | 14 | 20 |
| 286 | 241.66 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 428 | 242.50 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 1 | 19 |
| 434 | 242.51 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 6 | 12 |
| 435 | 242.51 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 6 | 14 |
| 437 | 242.51 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 2 | 16 |
| 446 | 242.51 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 6 | 20 |
| 455 | 242.51 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 4 | 23 |
| 457 | 242.51 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 19 | 23 |
| 459 | 242.51 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 23 | NA |
| 462 | 242.52 | radiation | 20.0 | 1440 | < th | dose independent | no | NA | NA |
| 533 | 242.70 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 634 | 242.95 | radiation | 1.0 | 1440 | > th | dose dependent | no | NA | NA |
| 635 | 242.95 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 4 | 15 |
| 726 | 243.14 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 1 | 9 |
| 818 | 243.28 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 1 | 9 |
| 820 | 243.28 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 1 | 9 |
| 824 | 243.32 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 1 | 9 |
| 837 | 243.39 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 1 | 5 |
| 841 | 243.41 | radiation | 20.0 | 1440 | < th | dose independent | sin | 4 | NA |
| 870 | 243.46 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 878 | 243.48 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 891 | 243.51 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 1 | 5 |
| 892 | 243.51 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 1 | 5 |
| 942 | 243.59 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 1 | 5 |
| 977 | 243.67 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 11 |
| 981 | 243.67 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 11 |
| 982 | 243.68 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 7 | 7 |
| 995 | 243.73 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 11 |