BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0608600 Os02g0608600|AK058418
(340 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G31810.1 | chr2:13524271-13528246 FORWARD LENGTH=492 531 e-151
AT5G16290.1 | chr5:5333874-5337387 FORWARD LENGTH=478 493 e-140
>AT2G31810.1 | chr2:13524271-13528246 FORWARD LENGTH=492
Length = 491
Score = 531 bits (1368), Expect = e-151, Method: Compositional matrix adjust.
Identities = 256/339 (75%), Positives = 293/339 (86%), Gaps = 2/339 (0%)
Query: 2 LQVEDLSKEPQVERELMLIKINVEPDQRPEVMVLVDIFRAKVVDISENTLTIEVTGDPGK 61
L+VED+S EPQVERELML+K+N P+ R E+M LVD FRA+VVDI+E+ LTIEVTGDPGK
Sbjct: 153 LKVEDISSEPQVERELMLVKVNAHPESRAEIMWLVDTFRARVVDIAEHALTIEVTGDPGK 212
Query: 62 IVAVQRNLSKFGIKEICRTGKIALRREKIGATARFWGFSAASYPDLIEALPKNSLLTSVN 121
++AV+RNL KF I+EI RTGKIALRREK+GATA FW FSAASYPDL E P + L +S
Sbjct: 213 MIAVERNLKKFQIREIVRTGKIALRREKMGATAPFWRFSAASYPDLKEQAPVSVLRSSKK 272
Query: 122 KTVNGSFDQPSNAGGDVYPVEPYEGSSMNQVLDAHWGVLDDEDSSGLRSHTLSILVNDCP 181
+ + ++AGGDVYPVEP+ ++++LDAHWG+L DED+SGLRSHTLS+LVND P
Sbjct: 273 GAIVP--QKETSAGGDVYPVEPFFDPKVHRILDAHWGLLTDEDTSGLRSHTLSLLVNDIP 330
Query: 182 GVLNIVTGVFARRGYNIQSLAVGPAEKSGLSRITTVAPGTDESIEKLVQQLNKLVDVHEV 241
GVLNIVTGVFARRGYNIQSLAVG AE G+SRITTV P TDES+ KLVQQL KLVDVHEV
Sbjct: 331 GVLNIVTGVFARRGYNIQSLAVGHAETKGISRITTVIPATDESVSKLVQQLYKLVDVHEV 390
Query: 242 QDITHLPFAERELMLIKVSVNTAARRDILDIAEIFRAKSVDVSDHTVTLQLTGDLDKMVA 301
D+THLPF+ERELMLIK++VN AARRD+LDIA IFRAK+VDVSDHT+TLQLTGDLDKMVA
Sbjct: 391 HDLTHLPFSERELMLIKIAVNAAARRDVLDIASIFRAKAVDVSDHTITLQLTGDLDKMVA 450
Query: 302 LQRLLEPYGICEVARTGRVALVRESGVDSKYLRGYSFPL 340
LQRLLEPYGICEVARTGRVAL RESGVDSKYLRGYSFPL
Sbjct: 451 LQRLLEPYGICEVARTGRVALARESGVDSKYLRGYSFPL 489
Score = 149 bits (375), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 77/177 (43%), Positives = 122/177 (68%), Gaps = 5/177 (2%)
Query: 166 SGLRSHTLSILVNDCPGVLNIVTGVFARRGYNIQSLAVGPAEKSGLSRITTVAPGTDESI 225
S +R HT+S+ V D G++N + GVFARRGYNI+SLAVG L T V GT+ +
Sbjct: 82 SKVRKHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNRDKAL--FTIVVCGTERVL 139
Query: 226 EKLVQQLNKLVDVHEVQDITHLPFAERELMLIKVSVNTAARRDILDIAEIFRAKSVDVSD 285
+++++QL KLV+V +V+DI+ P ERELML+KV+ + +R +I+ + + FRA+ VD+++
Sbjct: 140 QQVIEQLQKLVNVLKVEDISSEPQVERELMLVKVNAHPESRAEIMWLVDTFRARVVDIAE 199
Query: 286 HTVTLQLTGDLDKMVALQRLLEPYGICEVARTGRVALVRES-GVDSKYLR--GYSFP 339
H +T+++TGD KM+A++R L+ + I E+ RTG++AL RE G + + R S+P
Sbjct: 200 HALTIEVTGDPGKMIAVERNLKKFQIREIVRTGKIALRREKMGATAPFWRFSAASYP 256
>AT5G16290.1 | chr5:5333874-5337387 FORWARD LENGTH=478
Length = 477
Score = 493 bits (1270), Expect = e-140, Method: Compositional matrix adjust.
Identities = 237/339 (69%), Positives = 284/339 (83%), Gaps = 4/339 (1%)
Query: 2 LQVEDLSKEPQVERELMLIKINVEPDQRPEVMVLVDIFRAKVVDISENTLTIEVTGDPGK 61
++VEDLSKEP VERELMLIK+N +P R E+M LVDIFRAK+VD SE +LTIEVTGDPGK
Sbjct: 143 IKVEDLSKEPHVERELMLIKLNADPSTRSEIMWLVDIFRAKIVDTSEQSLTIEVTGDPGK 202
Query: 62 IVAVQRNLSKFGIKEICRTGKIALRREKIGATARFWGFSAASYPDLIEALPKNSLLTSVN 121
+VA+ NL KFGIKEI RTGKIALRREK+G TA FW FSAASYP L++ ++
Sbjct: 203 MVALTTNLEKFGIKEIARTGKIALRREKMGETAPFWRFSAASYPHLVKESSHETVAEKTK 262
Query: 122 KTVNGSFDQPSNAGGDVYPVEPYEGSSMNQVLDAHWGVLDDEDSSGLRSHTLSILVNDCP 181
+ G+ + +++GGDVYPVEPY + VLDAHWG++ DEDSSGLRSHTLS+LV + P
Sbjct: 263 LALTGNGN--ASSGGDVYPVEPY--NDFKPVLDAHWGMVYDEDSSGLRSHTLSLLVANVP 318
Query: 182 GVLNIVTGVFARRGYNIQSLAVGPAEKSGLSRITTVAPGTDESIEKLVQQLNKLVDVHEV 241
GVLN++TG +RRGYNIQSLAVGPAEK GLSRITTV PGTDE+I+KLV+QL KL+D+ E+
Sbjct: 319 GVLNLITGAISRRGYNIQSLAVGPAEKEGLSRITTVIPGTDENIDKLVRQLQKLIDLQEI 378
Query: 242 QDITHLPFAERELMLIKVSVNTAARRDILDIAEIFRAKSVDVSDHTVTLQLTGDLDKMVA 301
Q+ITH+PFAERELMLIKV+ +T+ARRD+LDIA++FRAK++DVSDHT+TL++TGDL KM A
Sbjct: 379 QNITHMPFAERELMLIKVAADTSARRDVLDIAQVFRAKAIDVSDHTITLEVTGDLRKMSA 438
Query: 302 LQRLLEPYGICEVARTGRVALVRESGVDSKYLRGYSFPL 340
LQ LE YGICEVARTGRVALVRESGVDS YLRGYS PL
Sbjct: 439 LQTQLEAYGICEVARTGRVALVRESGVDSTYLRGYSLPL 477
Score = 159 bits (403), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 85/175 (48%), Positives = 124/175 (70%), Gaps = 5/175 (2%)
Query: 168 LRSHTLSILVNDCPGVLNIVTGVFARRGYNIQSLAVGPAEKSGLSRITTVAPGTDESIEK 227
+R HT+S+ V D G++N + GVFARRGYNI+SLAVG E L T V GTD+ +++
Sbjct: 74 VRRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNEDKAL--FTIVVLGTDKVLQQ 131
Query: 228 LVQQLNKLVDVHEVQDITHLPFAERELMLIKVSVNTAARRDILDIAEIFRAKSVDVSDHT 287
+V+QLNKLV+V +V+D++ P ERELMLIK++ + + R +I+ + +IFRAK VD S+ +
Sbjct: 132 VVEQLNKLVNVIKVEDLSKEPHVERELMLIKLNADPSTRSEIMWLVDIFRAKIVDTSEQS 191
Query: 288 VTLQLTGDLDKMVALQRLLEPYGICEVARTGRVALVRES-GVDSKYLR--GYSFP 339
+T+++TGD KMVAL LE +GI E+ARTG++AL RE G + + R S+P
Sbjct: 192 LTIEVTGDPGKMVALTTNLEKFGIKEIARTGKIALRREKMGETAPFWRFSAASYP 246
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.135 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,773,093
Number of extensions: 270339
Number of successful extensions: 761
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 754
Number of HSP's successfully gapped: 4
Length of query: 340
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 241
Effective length of database: 8,392,385
Effective search space: 2022564785
Effective search space used: 2022564785
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)