BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0608600 Os02g0608600|AK058418
         (340 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0608600  Acetolactate synthase, small subunit family pr...   693   0.0  
Os11g0256000  Acetolactate synthase, small subunit family pr...   180   1e-45

>Os02g0608600 Acetolactate synthase, small subunit family protein
          Length = 340

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/340 (100%), Positives = 340/340 (100%)

Query: 1   KLQVEDLSKEPQVERELMLIKINVEPDQRPEVMVLVDIFRAKVVDISENTLTIEVTGDPG 60
           KLQVEDLSKEPQVERELMLIKINVEPDQRPEVMVLVDIFRAKVVDISENTLTIEVTGDPG
Sbjct: 1   KLQVEDLSKEPQVERELMLIKINVEPDQRPEVMVLVDIFRAKVVDISENTLTIEVTGDPG 60

Query: 61  KIVAVQRNLSKFGIKEICRTGKIALRREKIGATARFWGFSAASYPDLIEALPKNSLLTSV 120
           KIVAVQRNLSKFGIKEICRTGKIALRREKIGATARFWGFSAASYPDLIEALPKNSLLTSV
Sbjct: 61  KIVAVQRNLSKFGIKEICRTGKIALRREKIGATARFWGFSAASYPDLIEALPKNSLLTSV 120

Query: 121 NKTVNGSFDQPSNAGGDVYPVEPYEGSSMNQVLDAHWGVLDDEDSSGLRSHTLSILVNDC 180
           NKTVNGSFDQPSNAGGDVYPVEPYEGSSMNQVLDAHWGVLDDEDSSGLRSHTLSILVNDC
Sbjct: 121 NKTVNGSFDQPSNAGGDVYPVEPYEGSSMNQVLDAHWGVLDDEDSSGLRSHTLSILVNDC 180

Query: 181 PGVLNIVTGVFARRGYNIQSLAVGPAEKSGLSRITTVAPGTDESIEKLVQQLNKLVDVHE 240
           PGVLNIVTGVFARRGYNIQSLAVGPAEKSGLSRITTVAPGTDESIEKLVQQLNKLVDVHE
Sbjct: 181 PGVLNIVTGVFARRGYNIQSLAVGPAEKSGLSRITTVAPGTDESIEKLVQQLNKLVDVHE 240

Query: 241 VQDITHLPFAERELMLIKVSVNTAARRDILDIAEIFRAKSVDVSDHTVTLQLTGDLDKMV 300
           VQDITHLPFAERELMLIKVSVNTAARRDILDIAEIFRAKSVDVSDHTVTLQLTGDLDKMV
Sbjct: 241 VQDITHLPFAERELMLIKVSVNTAARRDILDIAEIFRAKSVDVSDHTVTLQLTGDLDKMV 300

Query: 301 ALQRLLEPYGICEVARTGRVALVRESGVDSKYLRGYSFPL 340
           ALQRLLEPYGICEVARTGRVALVRESGVDSKYLRGYSFPL
Sbjct: 301 ALQRLLEPYGICEVARTGRVALVRESGVDSKYLRGYSFPL 340



>Os11g0256000 Acetolactate synthase, small subunit family protein
          Length = 108

 Score =  180 bits (457), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 87/102 (85%), Positives = 96/102 (94%), Gaps = 1/102 (0%)

Query: 240 EVQDITHLPFAERELMLIKVSVNTAARRDILDIAEIFRAKSVDVSDHTVTLQ-LTGDLDK 298
           +VQD+THLPFA RELM+IK++VNT ARR ILDIA+IFRAK+VDVSDHTVTLQ LTGDLDK
Sbjct: 7   QVQDLTHLPFAARELMIIKIAVNTTARRAILDIADIFRAKTVDVSDHTVTLQQLTGDLDK 66

Query: 299 MVALQRLLEPYGICEVARTGRVALVRESGVDSKYLRGYSFPL 340
           MVALQR+LEPYGICEVARTGRVAL RESGVDSKYLRG+S PL
Sbjct: 67  MVALQRMLEPYGICEVARTGRVALRRESGVDSKYLRGFSLPL 108




 Score = 92.4 bits (228), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 48/100 (48%), Positives = 68/100 (68%), Gaps = 1/100 (1%)

Query: 2   LQVEDLSKEPQVERELMLIKINVEPDQRPEVMVLVDIFRAKVVDISENTLTI-EVTGDPG 60
            QV+DL+  P   RELM+IKI V    R  ++ + DIFRAK VD+S++T+T+ ++TGD  
Sbjct: 6   FQVQDLTHLPFAARELMIIKIAVNTTARRAILDIADIFRAKTVDVSDHTVTLQQLTGDLD 65

Query: 61  KIVAVQRNLSKFGIKEICRTGKIALRREKIGATARFWGFS 100
           K+VA+QR L  +GI E+ RTG++ALRRE    +    GFS
Sbjct: 66  KMVALQRMLEPYGICEVARTGRVALRRESGVDSKYLRGFS 105



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.135    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,315,552
Number of extensions: 399717
Number of successful extensions: 998
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 994
Number of HSP's successfully gapped: 3
Length of query: 340
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 238
Effective length of database: 11,709,973
Effective search space: 2786973574
Effective search space used: 2786973574
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)