BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0242600 Os11g0242600|Os11g0242600
         (316 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0242600  Protein of unknown function DUF579, plant fami...   314   5e-86
Os12g0204500  Protein of unknown function DUF579, plant fami...   115   4e-26

>Os11g0242600 Protein of unknown function DUF579, plant family protein
          Length = 316

 Score =  314 bits (805), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 176/316 (55%), Positives = 176/316 (55%)

Query: 1   MASPMHARRAKLKSQLVSAKAKLKHHVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MASPMHARRAKLKSQLVSAKAKLKHHVT                                
Sbjct: 1   MASPMHARRAKLKSQLVSAKAKLKHHVTPRRLLLLSAAAASAFLLLLTLRTLSAAAANTS 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXPAGVAEALVHYATSNATAWGRGXXXXXXXXXXXXXXXX 120
                                 PAGVAEALVHYATSNATAWGRG                
Sbjct: 61  SPAPVVVHRSQQQQRDDQCDRVPAGVAEALVHYATSNATAWGRGRRRSAEEVAATARAVS 120

Query: 121 XXXPCNLLVFXXXXXXXXXXXXXXXXRTVFLEEDDALVSGASPASLAIXXXXXXXXXXXX 180
              PCNLLVF                RTVFLEEDDALVSGASPASLAI            
Sbjct: 121 RRAPCNLLVFGLGHGAALWAALNHGGRTVFLEEDDALVSGASPASLAIEAYRVAYLASAA 180

Query: 181 XXXXXXXXXXXXHCTGAAATQLSPGHFDRSPCKLAVRGLPAAFYEAEWDVIVVDAHAXXX 240
                       HCTGAAATQLSPGHFDRSPCKLAVRGLPAAFYEAEWDVIVVDAHA   
Sbjct: 181 DADELLALRDSEHCTGAAATQLSPGHFDRSPCKLAVRGLPAAFYEAEWDVIVVDAHAPPP 240

Query: 241 XXXXAMMGAIYTXXXXXXXXXXXXETETXXXXXXXXKPVQDRFSTAFLCGGYLKEGVGNL 300
               AMMGAIYT            ETET        KPVQDRFSTAFLCGGYLKEGVGNL
Sbjct: 241 PTTTAMMGAIYTAAVAARARRPAAETETDVVVHDVDKPVQDRFSTAFLCGGYLKEGVGNL 300

Query: 301 RRFAIPSHKEGMPFCP 316
           RRFAIPSHKEGMPFCP
Sbjct: 301 RRFAIPSHKEGMPFCP 316



>Os12g0204500 Protein of unknown function DUF579, plant family protein
          Length = 295

 Score =  115 bits (288), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/236 (33%), Positives = 97/236 (41%), Gaps = 12/236 (5%)

Query: 83  PAGVAEALVHYATSNATAWGRGXXXXXXXXXXXXXXXXXXXPCNLLVFXXXXXXXXXXXX 142
           PA VA+A+VHYAT+N T                        PCN LVF            
Sbjct: 70  PAAVAQAMVHYATANVTP-----QQTAAEIGVSLRVLQLRAPCNFLVFGLGLDSAMWAAL 124

Query: 143 XXXXRTVFLEEDDALVSGASPASLAIXXXXXXXXXXXXXXXXXXXXXXXXHCTGAAATQL 202
               RTVFLEED + ++        +                         CT    +Q 
Sbjct: 125 NHGGRTVFLEEDASWIASVKAGHPGLESYHVAYDTRVTDADELIALRHEPACT----SQP 180

Query: 203 SPGHFDRSPCKLAVRGLPAAFYEAEWDVIVVDAHAXXXXXXXAMMGAIYTXXXXXXXXXX 262
                  + C+LA+RGLP  F+E EWD+I+VDA           MGAIYT          
Sbjct: 181 DLAAAAAASCRLALRGLPPVFHEVEWDLIMVDAPTGWTPESPGRMGAIYTAGMAARARTP 240

Query: 263 XXETETXXXXXXXXKPVQDRFSTAFLCGGYLKEGVGNLRRFAIPSH--KEGMPFCP 316
                T        + V+D FS AFLC GYL E VG +RRF IPSH  K+G PFCP
Sbjct: 241 GAGA-TEVFVHDVDRHVEDTFSKAFLCDGYLVEQVGRIRRFVIPSHRDKDGTPFCP 295



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.132    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,616,532
Number of extensions: 121223
Number of successful extensions: 268
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 263
Number of HSP's successfully gapped: 2
Length of query: 316
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 215
Effective length of database: 11,762,187
Effective search space: 2528870205
Effective search space used: 2528870205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)