BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0224600 Os11g0224600|AK100785
         (492 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0224600  Conserved hypothetical protein                      573   e-164
Os11g0224400  Conserved hypothetical protein                      228   8e-60

>Os11g0224600 Conserved hypothetical protein
          Length = 492

 Score =  573 bits (1478), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 320/430 (74%), Positives = 320/430 (74%)

Query: 63  VPDPNIFNKEAVCPKTTDEKACQQLVKVLPPEFAETKDAKGLAKLCISSVGFSAEQFTKD 122
           VPDPNIFNKEAVCPKTTDEKACQQLVKVLPPEFAETKDAKGLAKLCISSVGFSAEQFTKD
Sbjct: 63  VPDPNIFNKEAVCPKTTDEKACQQLVKVLPPEFAETKDAKGLAKLCISSVGFSAEQFTKD 122

Query: 123 AIAAVQECKKPDKCLDSCVQASTAVTDALKPSGAGVNTVKVPEDEWLLAIHASFSQLLRG 182
           AIAAVQECKKPDKCLDSCVQASTAVTDALKPSGAGVNTVKVPEDEWLLAIHASFSQLLRG
Sbjct: 123 AIAAVQECKKPDKCLDSCVQASTAVTDALKPSGAGVNTVKVPEDEWLLAIHASFSQLLRG 182

Query: 183 PAGGVSRPPLCKTCCDDGSCKDAKKLNVVSVFSRMWDFLDFTDAVLDDLYPLXXXXXXXX 242
           PAGGVSRPPLCKTCCDDGSCKDAKKLNVVSVFSRMWDFLDFTDAVLDDLYPL        
Sbjct: 183 PAGGVSRPPLCKTCCDDGSCKDAKKLNVVSVFSRMWDFLDFTDAVLDDLYPLTKTTGTKA 242

Query: 243 XXXXXXXXDKVAYAAKGSTEGKETAPAAESTVDKETSPAAESTVDMATSAAAGSTADKNA 302
                   DKVAYAAKGSTEGKETAPAAESTVDKETSPAAESTVDMATSAAAGSTADKNA
Sbjct: 243 TTTAGSTADKVAYAAKGSTEGKETAPAAESTVDKETSPAAESTVDMATSAAAGSTADKNA 302

Query: 303 YPAAESTADKXXXXXXXXXXXXXXXXXXXXXXXKEXXXXXXXXXXXXXXXXXXXXXDKET 362
           YPAAESTADK                       KE                     DKET
Sbjct: 303 YPAAESTADKETSPAAESTADTATSAAAGPTADKETSPAAESTADTATSAAAGSTADKET 362

Query: 363 SLAAEPTADTATSAVAGSTADKXXXXXXXXXXXXXXXXXXXXXXXKETSPXXXXXXXXXX 422
           SLAAEPTADTATSAVAGSTADK                       KETSP          
Sbjct: 363 SLAAEPTADTATSAVAGSTADKETSPAAEPTADTATSAAAGSTADKETSPAAESTVDTAT 422

Query: 423 XXXXXXXXDKETSPAAESTVDKETSAVAGSTADKNTYPAAGSAAEKETSSAAGSAPVVDX 482
                   DKETSPAAESTVDKETSAVAGSTADKNTYPAAGSAAEKETSSAAGSAPVVD 
Sbjct: 423 SAAAGSTADKETSPAAESTVDKETSAVAGSTADKNTYPAAGSAAEKETSSAAGSAPVVDT 482

Query: 483 XXXXXXXXYV 492
                   YV
Sbjct: 483 APAAPPTTYV 492



>Os11g0224400 Conserved hypothetical protein
          Length = 295

 Score =  228 bits (581), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 135/242 (55%), Positives = 154/242 (63%), Gaps = 10/242 (4%)

Query: 63  VPDPNIFNKEAVCPKTTDEKACQQLVKVLPPEF-AETKDAKGLAKLCISSVGFSAEQFTK 121
           +PDPNI N EA+CPKTTD KACQQLVK +P    A  KDA+ +A+ CI++  F A    K
Sbjct: 39  IPDPNILNMEAMCPKTTDVKACQQLVKNMPSNIVAGKKDARSIARGCIATAWFVARDGAK 98

Query: 122 DAIAAVQECK-KPDKCLDSCVQASTAVTDALKPSGAGVNTVKVPEDEWLLAIHASFSQLL 180
           D  AAV ECK K D+CLDSC  A  AV DAL+P G G + VKVPEDE LLAIHAS +QLL
Sbjct: 99  DCTAAVDECKDKVDQCLDSCRHAFAAVNDALEPQGTGDDAVKVPEDEKLLAIHASLTQLL 158

Query: 181 RGPAGGVSRPPLCKTCCDDGSCKDAKKLNVVSVFSRMWDFLDFTDAVLDDLYPLX----- 235
           RGP  G  RPPLC TCC DGSC + KK NVV++F ++W  LDF DAVL+DLYPL      
Sbjct: 159 RGPT-GTRRPPLCNTCCQDGSCTEEKKRNVVALFVQLWSLLDFADAVLEDLYPLTKLPGD 217

Query: 236 -XXXXXXXXXXXXXXXDKVAYAAKGSTEGKETAPAAESTVDKETSPAAESTVDMATSAAA 294
                           DK   AA GST    T+ AA ST  KETSP A ST D  T AAA
Sbjct: 218 KAAGSDTSAAAAGSTADKETSAAAGSTADTATSAAAGSTSAKETSPVAGSTAD-KTYAAA 276

Query: 295 GS 296
           GS
Sbjct: 277 GS 278



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.306    0.121    0.339 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,531,774
Number of extensions: 371430
Number of successful extensions: 1615
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1548
Number of HSP's successfully gapped: 2
Length of query: 492
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 387
Effective length of database: 11,553,331
Effective search space: 4471139097
Effective search space used: 4471139097
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 158 (65.5 bits)