BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0209400 Os11g0209400|J065028B22
         (97 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0209400  Hypothetical protein                                197   1e-51
Os11g0209100  Cyclin-like F-box domain containing protein          74   3e-14

>Os11g0209400 Hypothetical protein
          Length = 97

 Score =  197 bits (501), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 97/97 (100%), Positives = 97/97 (100%)

Query: 1  NYLHPSTLPVLENLTLQFFYPVHMYLYSKLETSAYSRMERSSAISEHLKIVVVKCGVVDE 60
          NYLHPSTLPVLENLTLQFFYPVHMYLYSKLETSAYSRMERSSAISEHLKIVVVKCGVVDE
Sbjct: 1  NYLHPSTLPVLENLTLQFFYPVHMYLYSKLETSAYSRMERSSAISEHLKIVVVKCGVVDE 60

Query: 61 RVIKILKFLSTFNIGKLTSNIIRSFCISEICLPLDCK 97
          RVIKILKFLSTFNIGKLTSNIIRSFCISEICLPLDCK
Sbjct: 61 RVIKILKFLSTFNIGKLTSNIIRSFCISEICLPLDCK 97



>Os11g0209100 Cyclin-like F-box domain containing protein
          Length = 416

 Score = 73.6 bits (179), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/66 (56%), Positives = 48/66 (72%)

Query: 9   PVLENLTLQFFYPVHMYLYSKLETSAYSRMERSSAISEHLKIVVVKCGVVDERVIKILKF 68
           PV+E L L+FF+ V  +        + S+MERSSAIS+HLK+V+VKC  +D R+ KILKF
Sbjct: 346 PVIEKLILEFFFEVTEHDDEVEMKGSCSQMERSSAISKHLKLVIVKCNAIDGRITKILKF 405

Query: 69  LSTFNI 74
           LSTFNI
Sbjct: 406 LSTFNI 411



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.139    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,707,197
Number of extensions: 77937
Number of successful extensions: 250
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 250
Number of HSP's successfully gapped: 2
Length of query: 97
Length of database: 17,035,801
Length adjustment: 66
Effective length of query: 31
Effective length of database: 13,589,677
Effective search space: 421279987
Effective search space used: 421279987
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 149 (62.0 bits)