BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0202600 Os11g0202600|AK102530
         (190 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0202600  Hypothetical protein                                398   e-111
Os12g0194100  Hypothetical protein                                219   1e-57

>Os11g0202600 Hypothetical protein
          Length = 190

 Score =  398 bits (1023), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 190/190 (100%), Positives = 190/190 (100%)

Query: 1   MSSSEGSKWVSRCVFGSPPNLSELDELAVLYHEQAARNTRDYVRSWICPDCRKEYKPIQN 60
           MSSSEGSKWVSRCVFGSPPNLSELDELAVLYHEQAARNTRDYVRSWICPDCRKEYKPIQN
Sbjct: 1   MSSSEGSKWVSRCVFGSPPNLSELDELAVLYHEQAARNTRDYVRSWICPDCRKEYKPIQN 60

Query: 61  MLVDLPPFSCDDCGLKNDAAYEWRITQCLINGVSLDFKVYDQNRKPHCTLYSVAATIDAT 120
           MLVDLPPFSCDDCGLKNDAAYEWRITQCLINGVSLDFKVYDQNRKPHCTLYSVAATIDAT
Sbjct: 61  MLVDLPPFSCDDCGLKNDAAYEWRITQCLINGVSLDFKVYDQNRKPHCTLYSVAATIDAT 120

Query: 121 RRVEGAKKGLIISTPLDVPEMAKTYEQVTGFELGKEPPEELFETMVKAVVMNISLRKIAV 180
           RRVEGAKKGLIISTPLDVPEMAKTYEQVTGFELGKEPPEELFETMVKAVVMNISLRKIAV
Sbjct: 121 RRVEGAKKGLIISTPLDVPEMAKTYEQVTGFELGKEPPEELFETMVKAVVMNISLRKIAV 180

Query: 181 MMRLILSFIF 190
           MMRLILSFIF
Sbjct: 181 MMRLILSFIF 190



>Os12g0194100 Hypothetical protein
          Length = 306

 Score =  219 bits (557), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 96/151 (63%), Positives = 119/151 (78%), Gaps = 2/151 (1%)

Query: 14  VFGSPPNLSELDELAVLYHEQAARNTRDYVRSWICPDCRKEYKPIQNMLVDLPPFSCDDC 73
           V G  P +SELDE A +Y ++  R   DYVR+WICP CRKEY+PI+NMLVDLPPF C DC
Sbjct: 5   VIGPAPEISELDERAAMYRDK--RKAMDYVRNWICPGCRKEYEPIKNMLVDLPPFGCVDC 62

Query: 74  GLKNDAAYEWRITQCLINGVSLDFKVYDQNRKPHCTLYSVAATIDATRRVEGAKKGLIIS 133
           GLKNDAAYEW+ITQC +NG+SLDFK YDQ  +PHCTLY++ A ID TRR+EGA+KG + S
Sbjct: 63  GLKNDAAYEWKITQCTLNGISLDFKTYDQKLEPHCTLYAITAVIDCTRRLEGAQKGFVFS 122

Query: 134 TPLDVPEMAKTYEQVTGFELGKEPPEELFET 164
            P D+ EM +TY + TGF+LG EP ++L+ET
Sbjct: 123 APFDINEMVETYNKRTGFKLGNEPQDKLYET 153



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.136    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,583,186
Number of extensions: 246984
Number of successful extensions: 437
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 436
Number of HSP's successfully gapped: 2
Length of query: 190
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 95
Effective length of database: 12,075,471
Effective search space: 1147169745
Effective search space used: 1147169745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)