Os11g0202600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os11g0202600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 168.98 | 0.611 | 3.25 | 0.198 | 0.458 | 1.19 | -0.033 | 1.24 | -0.0613 | 16 | 42.15 | 1547 | -- | -- |
| 170.28 | 0.608 | 3.26 | 0.0651 | 0.435 | 1.26 | -0.04 | -- | -0.116 | 16 | 40 | 1593 | -- | -- |
| 168.82 | 0.605 | 3.24 | 0.221 | 0.446 | 1.3 | -- | 1.5 | -0.0475 | 16 | 43.31 | 1560 | -- | -- |
| 170.23 | 0.608 | 3.26 | 0.0804 | 0.422 | 1.25 | -- | -- | -0.103 | 16.1 | 40 | 1594 | -- | -- |
| 174.74 | 0.616 | 3.25 | 0.231 | -- | 1.32 | -- | 1.58 | -0.0488 | -- | 43.42 | 1890 | -- | -- |
| 199.36 | 0.662 | 3.23 | 0.13 | 0.45 | -- | -0.194 | -- | 0.0481 | 15.8 | -- | -- | -- | -- |
| 199.47 | 0.661 | 3.23 | 0.127 | 0.449 | -- | -- | -- | 0.047 | 15.8 | -- | -- | -- | -- |
| 175.36 | 0.617 | 3.26 | 0.0692 | -- | 1.22 | -- | -- | -0.102 | -- | 40 | 1890 | -- | -- |
| 170.39 | 0.608 | 3.26 | -- | 0.417 | 1.25 | -- | -- | -0.106 | 16.1 | 40 | 1593 | -- | -- |
| 210.55 | 0.678 | 3.23 | 0.108 | -- | -- | -- | -- | 0.035 | -- | -- | -- | -- | -- |
| 199.9 | 0.661 | 3.23 | -- | 0.446 | -- | -- | -- | 0.0328 | 15.8 | -- | -- | -- | -- |
| 175.42 | 0.617 | 3.26 | -- | -- | 1.22 | -- | -- | -0.124 | -- | 40 | 1890 | -- | -- |
| 210.86 | 0.678 | 3.23 | -- | -- | -- | -- | -- | 0.023 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 165.42 | radiation | 10 | 1440 | < th | dose dependent | rect. | 17 | 13 |
| 5 | 166.20 | radiation | 40 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 8 | 166.32 | radiation | 40 | 1440 | < th | dose dependent | rect. | 17 | 8 |
| 10 | 166.35 | radiation | 40 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 14 | 166.36 | radiation | 1 | 1440 | > th | dose dependent | rect. | 17 | 13 |
| 53 | 166.83 | radiation | 1 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 69 | 167.28 | radiation | 10 | 14400 | > th | dose independent | rect. | 17 | 13 |
| 71 | 167.41 | humidity | 60 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 84 | 167.48 | radiation | 10 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 152 | 168.25 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 17 |
| 156 | 168.38 | humidity | 50 | 14400 | > th | dose independent | rect. | 17 | 6 |
| 170 | 168.44 | humidity | 50 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 199 | 168.72 | radiation | 1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 200 | 168.73 | humidity | 50 | 14400 | < th | dose independent | rect. | 16 | 18 |
| 205 | 168.78 | radiation | 40 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 206 | 168.79 | radiation | 40 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 207 | 168.79 | radiation | 20 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 220 | 168.92 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 221 | 168.92 | radiation | 40 | 14400 | < th | dose dependent | rect. | 17 | 6 |
| 329 | 169.38 | radiation | 20 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 379 | 169.45 | radiation | 20 | 14400 | < th | dose independent | rect. | 16 | 7 |
| 388 | 169.47 | radiation | 1 | 1440 | < th | dose independent | rect. | 17 | 14 |
| 395 | 169.54 | radiation | 1 | 1440 | > th | dose independent | rect. | 17 | 13 |
| 409 | 169.60 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 6 |
| 427 | 169.66 | temperature | 30 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 500 | 169.98 | radiation | 10 | 1440 | > th | dose independent | rect. | 16 | 2 |
| 514 | 170.01 | temperature | 25 | 720 | > th | dose dependent | rect. | 8 | 2 |
| 532 | 170.20 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 2 |
| 533 | 170.20 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 7 |
| 538 | 170.24 | radiation | 40 | 1440 | > th | dose dependent | rect. | 12 | 22 |
| 582 | 170.53 | temperature | 25 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 603 | 170.66 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 619 | 170.66 | radiation | 40 | 1440 | > th | dose dependent | rect. | 12 | 3 |
| 696 | 170.89 | radiation | 30 | 14400 | > th | dose dependent | rect. | 15 | 17 |
| 720 | 171.02 | radiation | 30 | 14400 | > th | dose dependent | rect. | 15 | 2 |
| 738 | 171.10 | radiation | 10 | 1440 | < th | dose dependent | sin | 13 | NA |
| 748 | 171.20 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 756 | 171.25 | temperature | 30 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 760 | 171.28 | radiation | 30 | 14400 | < th | dose independent | rect. | 15 | 17 |
| 764 | 171.31 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 767 | 171.33 | wind | 5 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 789 | 171.45 | temperature | 30 | 14400 | < th | dose independent | rect. | 17 | 5 |
| 794 | 171.45 | temperature | 30 | 14400 | < th | dose independent | rect. | 17 | 8 |
| 799 | 171.46 | temperature | 30 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 807 | 171.46 | temperature | 30 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 904 | 171.74 | radiation | 1 | 1440 | > th | dose independent | sin | 12 | NA |
| 935 | 171.80 | radiation | 1 | 1440 | < th | dose independent | sin | 12 | NA |
| 956 | 171.81 | radiation | 10 | 1440 | < th | dose dependent | rect. | 5 | 1 |