Os12g0194100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os12g0194100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.03 | 0.37 | 9.3 | 1.39 | 0.206 | -1.76 | 0.691 | -4.75 | 0.848 | 17.6 | 20.96 | 5419 | -- | -- |
| 70.26 | 0.393 | 9.41 | 1.4 | 0.216 | 0.267 | 0.652 | -- | 0.903 | 17.4 | 24.41 | 1027 | -- | -- |
| 63.03 | 0.37 | 9.3 | 1.35 | 0.234 | -1.91 | -- | -5 | 0.849 | 18.2 | 20.36 | 5327 | -- | -- |
| 71 | 0.392 | 9.43 | 1.23 | 0.208 | -0.269 | -- | -- | 0.808 | 18.1 | 60.69 | 3794 | -- | -- |
| 65.07 | 0.376 | 9.23 | 1.23 | -- | -3.54 | -- | -8.72 | 0.861 | -- | 18.89 | 5418 | -- | -- |
| 71.35 | 0.396 | 9.42 | 1.35 | 0.203 | -- | 0.623 | -- | 0.857 | 17.9 | -- | -- | -- | -- |
| 72.23 | 0.398 | 9.42 | 1.34 | 0.209 | -- | -- | -- | 0.859 | 18.5 | -- | -- | -- | -- |
| 72.22 | 0.396 | 9.46 | 0.99 | -- | -0.361 | -- | -- | 0.716 | -- | 119.4 | 28091 | -- | -- |
| 73.84 | 0.4 | 9.53 | -- | 0.212 | -1.09 | -- | -- | 0.385 | 18.1 | 66.69 | 47520 | -- | -- |
| 74.5 | 0.403 | 9.41 | 1.33 | -- | -- | -- | -- | 0.855 | -- | -- | -- | -- | -- |
| 119.57 | 0.511 | 9.45 | -- | 0.192 | -- | -- | -- | 0.71 | 18.9 | -- | -- | -- | -- |
| 76.17 | 0.406 | 9.52 | -- | -- | -1.08 | -- | -- | 0.383 | -- | 75.69 | 47520 | -- | -- |
| 121.51 | 0.515 | 9.45 | -- | -- | -- | -- | -- | 0.707 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.95 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 3 | 61.00 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 15 | 10 |
| 4 | 61.00 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 22 | 6 |
| 5 | 61.00 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 21 | 8 |
| 14 | 61.02 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 20 | 11 |
| 23 | 61.05 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 23 | 2 |
| 26 | 61.05 | atmosphere | 1015 | 43200 | > th | dose dependent | sin | 11 | NA |
| 48 | 61.08 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 23 | 2 |
| 65 | 61.10 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 23 | 2 |
| 78 | 61.11 | atmosphere | 1015 | 43200 | > th | dose independent | sin | 16 | NA |
| 121 | 61.13 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 15 | 10 |
| 153 | 61.14 | atmosphere | 1015 | 43200 | > th | dose dependent | no | NA | NA |
| 159 | 61.14 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 3 | 21 |
| 179 | 61.15 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 5 | 23 |
| 181 | 61.15 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 10 | 23 |
| 337 | 61.22 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 2 | 1 |
| 393 | 61.25 | atmosphere | 1015 | 43200 | < th | dose independent | sin | 14 | NA |
| 395 | 61.25 | humidity | 50 | 43200 | > th | dose independent | rect. | 13 | 3 |
| 396 | 61.25 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 458 | 61.26 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 22 | 23 |
| 501 | 61.28 | atmosphere | 1015 | 43200 | > th | dose independent | no | NA | NA |
| 523 | 61.28 | atmosphere | 1015 | 43200 | > th | dose dependent | sin | 0 | NA |
| 527 | 61.28 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 5 | 14 |
| 553 | 61.29 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 6 | 12 |
| 589 | 61.31 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 594 | 61.31 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 22 | 9 |
| 633 | 61.32 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 6 | 19 |
| 640 | 61.32 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 22 | 22 |
| 661 | 61.33 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 22 | 10 |
| 675 | 61.33 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 8 | 17 |
| 692 | 61.33 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 6 | 22 |
| 762 | 61.35 | atmosphere | 1015 | 43200 | < th | dose independent | no | NA | NA |
| 763 | 61.35 | humidity | 50 | 43200 | > th | dose independent | rect. | 11 | 5 |
| 937 | 61.40 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 944 | 61.41 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 955 | 61.41 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 6 | 14 |
| 969 | 61.42 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 971 | 61.42 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 972 | 61.42 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 996 | 61.42 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 3 | 17 |