BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0195100 Os11g0195100|Os11g0195100
(1112 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0195100 SecA protein family protein 2178 0.0
AK110352 655 0.0
Os01g0321300 SecA protein family protein 76 2e-13
>Os11g0195100 SecA protein family protein
Length = 1112
Score = 2178 bits (5644), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1053/1087 (96%), Positives = 1053/1087 (96%)
Query: 26 VTPPPRLLPTSSILSPVYSARPKRPPTLSCNXXXXXXXXXXXGKPGSWRDLCSLNAWVVR 85
VTPPPRLLPTSSILSPVYSARPKRPPTLSCN GKPGSWRDLCSLNAWVVR
Sbjct: 26 VTPPPRLLPTSSILSPVYSARPKRPPTLSCNAAAATVAAAAAGKPGSWRDLCSLNAWVVR 85
Query: 86 DYRRLVDAVGALEPRLRGLTDERLRAKTDEFRARLARGETLADVQXXXXXXXXXXXXXTL 145
DYRRLVDAVGALEPRLRGLTDERLRAKTDEFRARLARGETLADVQ TL
Sbjct: 86 DYRRLVDAVGALEPRLRGLTDERLRAKTDEFRARLARGETLADVQAEAFAVVREAARRTL 145
Query: 146 GMRHFDVQIIGGAVLHDGCIAEMKTGEGKTLVSTLAAYLNALTSEGVHVVTVNDYLAQRD 205
GMRHFDVQIIGGAVLHDGCIAEMKTGEGKTLVSTLAAYLNALTSEGVHVVTVNDYLAQRD
Sbjct: 146 GMRHFDVQIIGGAVLHDGCIAEMKTGEGKTLVSTLAAYLNALTSEGVHVVTVNDYLAQRD 205
Query: 206 AEWMGRVHRFLGLSVGLIQAGMKADERRANYRCDITYTNNSYFYGIIWFSKITHNLQELG 265
AEWMGRVHRFLGLSVGLIQAGMKADERRANYRCDITYTNNSYFYGIIWFSKITHNLQELG
Sbjct: 206 AEWMGRVHRFLGLSVGLIQAGMKADERRANYRCDITYTNNSYFYGIIWFSKITHNLQELG 265
Query: 266 FDYLRDNLSRNKEQLVMRWPTPFHFAIVDEVDSVLIDEGRNPLLISGEDNRDAARYPVAA 325
FDYLRDNLSRNKEQLVMRWPTPFHFAIVDEVDSVLIDEGRNPLLISGEDNRDAARYPVAA
Sbjct: 266 FDYLRDNLSRNKEQLVMRWPTPFHFAIVDEVDSVLIDEGRNPLLISGEDNRDAARYPVAA 325
Query: 326 KAADLLMEGFHYTVELKSNNIDLTEDGVTCAEMILETNDLWDENDPWARFVMNALKAKEF 385
KAADLLMEGFHYTVELKSNNIDLTEDGVTCAEMILETNDLWDENDPWARFVMNALKAKEF
Sbjct: 326 KAADLLMEGFHYTVELKSNNIDLTEDGVTCAEMILETNDLWDENDPWARFVMNALKAKEF 385
Query: 386 YRRDVQYIVRDGKALIINEIIMWNLSFKVVMPILQYCIVPINGISIIILTLFELTGRVEP 445
YRRDVQYIVRDGKALIINEIIMWNLSFKVVMPILQYCIVPINGISIIILTLFELTGRVEP
Sbjct: 386 YRRDVQYIVRDGKALIINEIIMWNLSFKVVMPILQYCIVPINGISIIILTLFELTGRVEP 445
Query: 446 KRRWSDGIHQAVEAKEGLKIQADSVIVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMF 505
KRRWSDGIHQAVEAKEGLKIQADSVIVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMF
Sbjct: 446 KRRWSDGIHQAVEAKEGLKIQADSVIVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMF 505
Query: 506 KTPVIEVPTNLPNIRVDLPIQAFATARGKWQYVRAEVESMFHLGRPVLVGTTSVESSEYL 565
KTPVIEVPTNLPNIRVDLPIQAFATARGKWQYVRAEVESMFHLGRPVLVGTTSVESSEYL
Sbjct: 506 KTPVIEVPTNLPNIRVDLPIQAFATARGKWQYVRAEVESMFHLGRPVLVGTTSVESSEYL 565
Query: 566 SDLLKARNIPHNVLNARPKYAAREAEIVAQAGRKHAITISTNMAGRGTDIILGGNPKMLA 625
SDLLKARNIPHNVLNARPKYAAREAEIVAQAGRKHAITISTNMAGRGTDIILGGNPKMLA
Sbjct: 566 SDLLKARNIPHNVLNARPKYAAREAEIVAQAGRKHAITISTNMAGRGTDIILGGNPKMLA 625
Query: 626 KEIIEDNVLPFLTHEPPDVETVGESTSHKGLSKIKLGPSSLGXXXXXXXXXXYVQRSERN 685
KEIIEDNVLPFLTHEPPDVETVGESTSHKGLSKIKLGPSSLG YVQRSERN
Sbjct: 626 KEIIEDNVLPFLTHEPPDVETVGESTSHKGLSKIKLGPSSLGLLAKAAIIAKYVQRSERN 685
Query: 686 EWPFQKAKSTIAESVEMSHTIGMEKLQDRLAEESEMYPLCDTIGLAYLTVLRDCEIHCST 745
EWPFQKAKSTIAESVEMSHTIGMEKLQDRLAEESEMYPLCDTIGLAYLTVLRDCEIHCST
Sbjct: 686 EWPFQKAKSTIAESVEMSHTIGMEKLQDRLAEESEMYPLCDTIGLAYLTVLRDCEIHCST 745
Query: 746 EGAEVKALGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFRKFNLDTE 805
EGAEVKALGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFRKFNLDTE
Sbjct: 746 EGAEVKALGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFRKFNLDTE 805
Query: 806 WAVRLISRITNDEDIAIESNAVVKQLLGLQINAEKYYFGIRKSLVEFDEVLEVQRKHVYN 865
WAVRLISRITNDEDIAIESNAVVKQLLGLQINAEKYYFGIRKSLVEFDEVLEVQRKHVYN
Sbjct: 806 WAVRLISRITNDEDIAIESNAVVKQLLGLQINAEKYYFGIRKSLVEFDEVLEVQRKHVYN 865
Query: 866 LRQVILSGDSESCSEQIFQYMQAVADDIILGNADPQKPPNTWKLANLLDEFGSLGGTLLD 925
LRQVILSGDSESCSEQIFQYMQAVADDIILGNADPQKPPNTWKLANLLDEFGSLGGTLLD
Sbjct: 866 LRQVILSGDSESCSEQIFQYMQAVADDIILGNADPQKPPNTWKLANLLDEFGSLGGTLLD 925
Query: 926 EPFKEIQEEDLLSSLEQIHEYGPVNVDNFTLPNMPVSPNSFRGIWKRTSSMMRWLAICVD 985
EPFKEIQEEDLLSSLEQIHEYGPVNVDNFTLPNMPVSPNSFRGIWKRTSSMMRWLAICVD
Sbjct: 926 EPFKEIQEEDLLSSLEQIHEYGPVNVDNFTLPNMPVSPNSFRGIWKRTSSMMRWLAICVD 985
Query: 986 DASKKGRYTYIVNMLRKYFGDFLIATYLDAVQESRYDDAYIRGIEREILLKTLDTLWKDH 1045
DASKKGRYTYIVNMLRKYFGDFLIATYLDAVQESRYDDAYIRGIEREILLKTLDTLWKDH
Sbjct: 986 DASKKGRYTYIVNMLRKYFGDFLIATYLDAVQESRYDDAYIRGIEREILLKTLDTLWKDH 1045
Query: 1046 LVNMNKLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLGATRRLTVESLLHYWSSPMESEE 1105
LVNMNKLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLGATRRLTVESLLHYWSSPMESEE
Sbjct: 1046 LVNMNKLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLGATRRLTVESLLHYWSSPMESEE 1105
Query: 1106 IFNTGDK 1112
IFNTGDK
Sbjct: 1106 IFNTGDK 1112
>AK110352
Length = 1021
Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/841 (43%), Positives = 498/841 (59%), Gaps = 88/841 (10%)
Query: 85 RDYRRLVDAVGALEPRLRGLTDERLRAKTDEFRARLARGETLADVQXXXXXXXXXXXXXT 144
+ Y+ VDA+ ALE +++ L+D+RLRAKT EF+ R+ RGE+L +
Sbjct: 91 KQYQDRVDAINALERQMQNLSDDRLRAKTAEFKKRVQRGESLESLLPEAFAVVREASRRV 150
Query: 145 LGMRHFDVQIIGGAVLHDGCIAEMKTGEGKTLVSTLAAYLNALTSEGVHVVTVNDYLAQR 204
LG+R FDVQ+IGG +LH+G IAEM+TGEGKTLV+ L +YLNALT +GVHVVTVNDYLA+R
Sbjct: 151 LGLRPFDVQLIGGMILHEGQIAEMRTGEGKTLVAVLPSYLNALTGKGVHVVTVNDYLARR 210
Query: 205 DAEWMGRVHRFLGLSVGLIQAGMKADERRANYRCDITYTNNSYFYGIIWFSKITHNLQEL 264
D+EW+G+V RFLG+ VGL+QA M + RRA Y DITY NS EL
Sbjct: 211 DSEWVGQVPRFLGMQVGLVQADMTPETRRAAYTSDITYVTNS----------------EL 254
Query: 265 GFDYLRDNLSRNKEQLVMRWPTPFHFAIVDEVDSVLIDEGRNPLLISGEDNRDAARYPVA 324
GFDYLRDNL+ +LV+R PF++ ++DEVDS+LIDE R PL+ISG ++ + +Y A
Sbjct: 255 GFDYLRDNLAGAPAELVLRTNYPFNYCVIDEVDSILIDEARTPLIISGTSDKPSDKYYKA 314
Query: 325 AKAADLLMEGFHYTVELKSNNIDLTEDGVTCAEMILETNDLWDENDPWARFVMNALKAKE 384
AK AD L + HYTV+ K N+ LTEDG E +L+ DL+D WA +++NA+KAKE
Sbjct: 315 AKIADALTKDLHYTVDEKQRNVLLTEDGYEAVEDVLQVPDLYDPRTQWASYIINAIKAKE 374
Query: 385 FYRRDVQYIVRDGKALIINEIIMWNLSFKVVMPILQYCIVPINGISIIILTLFELTGRVE 444
+ +DV YIV+ + +I++E TGR
Sbjct: 375 LFIKDVNYIVKKDEVIIVDE----------------------------------FTGRTM 400
Query: 445 PKRRWSDGIHQAVEAKEGLKIQADSVIVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKM 504
P RRWSDG+HQAVEAKEGL I A+SV +A ++YQ+ F+ +PKL+GMTGTA TE EF +
Sbjct: 401 PGRRWSDGLHQAVEAKEGLDINAESVTLASVSYQAFFRNFPKLAGMTGTAATEVSEFDGI 460
Query: 505 FKTPVIEVPTNLPNIRVDLPIQAFATARGKWQYVRAEVESMFHLGRPVLVGTTSVESSEY 564
+K PV VPTN P R D P F + KW+ E++ + GRPVLVGTTSVE SE
Sbjct: 461 YKLPVAVVPTNRPISRADNPDVVFRLEQYKWRAAVTEIKRIHKEGRPVLVGTTSVEKSEL 520
Query: 565 LSDLLKARNIPHNVLNARPKYAAREAEIVAQAGRKHAITISTNMAGRGTDIILGGNPKML 624
LS++L I H VLNA+P+ RE+EIVAQ+GR+ A+TISTNMAGRGTDI+LGGNP +
Sbjct: 521 LSEMLAQEGIKHQVLNAKPENVERESEIVAQSGRRSAVTISTNMAGRGTDILLGGNPDYM 580
Query: 625 AKEIIEDNVLPFLTHEPPDVETVGESTSHKGLSKIKLGPSSLGXXXXXXXXXXYVQRSER 684
A+ + + ++P E V ++ + +K + G +++
Sbjct: 581 ARLKLRELLMP---------EVVSQADAADAYAKTRTGRANVASFAADPAI--------- 622
Query: 685 NEWPFQKAKSTIAESVEM---------SHTIGMEKLQDRLAEESEMYPLCDTIGL----A 731
+P Q + T+A ++ + +DRL+ E D + L
Sbjct: 623 --FPCQLSPETLAAGKAAAKAAAAMWGERSLALLDAEDRLSVACEKGATDDEVLLRLRAV 680
Query: 732 YLTVLRDCEIHCSTEGAEVKALGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVS 791
Y +L + + E A+V ALGGLHV+GT HESRRIDNQLRGR+GRQGDPGSTRF +S
Sbjct: 681 YQAMLSEYKAVTDREKADVVALGGLHVVGTERHESRRIDNQLRGRSGRQGDPGSTRFFLS 740
Query: 792 LQDEMFRKFNLDTEWAVRLISRITNDEDIAIESNAVVKQLLGLQINAEKYYFGIRKSLVE 851
L+D +FR F D + + R+ ED+ +ES + L Q E Y++ IRK+L +
Sbjct: 741 LEDSLFRVFGGDRIKNLMVAFRV---EDLPMESQMLTDALDTAQKRVEPYFYDIRKNLFD 797
Query: 852 FDEVLEVQRKHVYNLRQVILSGDSESCSEQIFQYMQAVADDIILGNADPQKPPNTWKLAN 911
+D+V+ QR VY R+ L D + + + +Y + DDI+ N D P+ W+L
Sbjct: 798 YDQVVNTQRDRVYAERRRALLSD--NLTPLMIEYAEKTCDDILEANVDRNADPSEWRLDA 855
Query: 912 L 912
L
Sbjct: 856 L 856
>Os01g0321300 SecA protein family protein
Length = 79
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 47/58 (81%)
Query: 578 VLNARPKYAAREAEIVAQAGRKHAITISTNMAGRGTDIILGGNPKMLAKEIIEDNVLP 635
VLNA+P+ REAEIVAQ+GR A+TI+TNMAGRGTDIILGGN + +A+ + + ++P
Sbjct: 1 VLNAKPENVEREAEIVAQSGRLGAVTIATNMAGRGTDIILGGNAEFMARLKLREMLMP 58
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 35,454,559
Number of extensions: 1437929
Number of successful extensions: 3353
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 3347
Number of HSP's successfully gapped: 3
Length of query: 1112
Length of database: 17,035,801
Length adjustment: 111
Effective length of query: 1001
Effective length of database: 11,240,047
Effective search space: 11251287047
Effective search space used: 11251287047
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 161 (66.6 bits)