Os01g0321300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SecA protein family protein.
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Os01g0321300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SecA protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.07 | 0.231 | 13.4 | -0.215 | 0.567 | -0.67 | 0.153 | 0.436 | -0.0412 | 23 | 20.1 | 3630 | -- | -- |
| 24.23 | 0.229 | 13.5 | -0.266 | 0.567 | -0.776 | 0.194 | -- | -0.0546 | 23 | 19.89 | 3514 | -- | -- |
| 23.85 | 0.227 | 13.5 | -0.27 | 0.59 | -0.656 | -- | 0.459 | -0.0769 | 23.1 | 20.2 | 2422 | -- | -- |
| 24.3 | 0.23 | 13.5 | -0.288 | 0.564 | -0.781 | -- | -- | -0.063 | 23 | 19.8 | 3524 | -- | -- |
| 42.78 | 0.305 | 13.4 | -0.249 | -- | -0.586 | -- | 0.594 | -0.0602 | -- | 19.8 | 3087 | -- | -- |
| 34.41 | 0.275 | 13.5 | -0.719 | 0.538 | -- | 0.17 | -- | -0.255 | 23 | -- | -- | -- | -- |
| 34.53 | 0.275 | 13.5 | -0.726 | 0.537 | -- | -- | -- | -0.255 | 22.9 | -- | -- | -- | -- |
| 42.84 | 0.305 | 13.5 | -0.301 | -- | -0.738 | -- | -- | -0.0754 | -- | 19.8 | 3125 | -- | -- |
| 25.31 | 0.234 | 13.5 | -- | 0.559 | -0.94 | -- | -- | -0.00487 | 23.1 | 19.1 | 6600 | -- | -- |
| 52.48 | 0.339 | 13.5 | -0.714 | -- | -- | -- | -- | -0.251 | -- | -- | -- | -- | -- |
| 48.41 | 0.325 | 13.5 | -- | 0.532 | -- | -- | -- | -0.174 | 22.9 | -- | -- | -- | -- |
| 44.09 | 0.309 | 13.4 | -- | -- | -0.954 | -- | -- | -0.0112 | -- | 19.1 | 8704 | -- | -- |
| 65.92 | 0.379 | 13.5 | -- | -- | -- | -- | -- | -0.172 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.31 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 2 | 23.31 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 3 | 23.41 | temperature | 15 | 720 | > th | dose dependent | sin | 9 | NA |
| 4 | 23.42 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 8 | 23.54 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 10 | 23.62 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 16 |
| 12 | 23.67 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 18 |
| 15 | 23.72 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 14 |
| 19 | 23.74 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 20 | 23.76 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 14 |
| 23 | 23.81 | temperature | 20 | 720 | < th | dose independent | rect. | 22 | 17 |
| 26 | 23.83 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 10 |
| 44 | 23.93 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 12 |
| 49 | 23.94 | temperature | 20 | 720 | < th | dose independent | sin | 7 | NA |
| 63 | 23.98 | temperature | 25 | 720 | < th | dose dependent | sin | 9 | NA |
| 83 | 24.03 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 16 |
| 192 | 24.32 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 6 |
| 331 | 24.59 | temperature | 20 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 345 | 24.62 | temperature | 20 | 4320 | > th | dose independent | rect. | 13 | 15 |
| 354 | 24.63 | temperature | 20 | 4320 | > th | dose independent | rect. | 15 | 12 |
| 362 | 24.64 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 365 | 24.64 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 10 |
| 369 | 24.64 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 379 | 24.66 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 382 | 24.66 | temperature | 20 | 4320 | < th | dose independent | rect. | 13 | 15 |
| 387 | 24.66 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 21 |
| 393 | 24.67 | temperature | 20 | 4320 | < th | dose independent | rect. | 15 | 12 |
| 427 | 24.69 | temperature | 25 | 4320 | < th | dose dependent | rect. | 11 | 19 |
| 439 | 24.70 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 23 |
| 443 | 24.70 | temperature | 25 | 4320 | < th | dose dependent | rect. | 12 | 17 |
| 458 | 24.71 | temperature | 20 | 4320 | < th | dose independent | rect. | 12 | 19 |
| 460 | 24.71 | temperature | 20 | 4320 | > th | dose independent | rect. | 9 | 22 |
| 461 | 24.71 | temperature | 20 | 4320 | < th | dose independent | rect. | 9 | 22 |
| 481 | 24.72 | temperature | 20 | 4320 | > th | dose independent | rect. | 12 | 22 |
| 483 | 24.72 | temperature | 20 | 4320 | > th | dose independent | rect. | 5 | 23 |
| 503 | 24.73 | temperature | 20 | 4320 | < th | dose independent | rect. | 13 | 21 |
| 541 | 24.74 | temperature | 20 | 4320 | < th | dose independent | rect. | 5 | 23 |
| 552 | 24.75 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 619 | 24.76 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 620 | 24.76 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 23 |
| 634 | 24.76 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 20 |
| 639 | 24.77 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 657 | 24.77 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 23 |
| 662 | 24.77 | temperature | 25 | 4320 | < th | dose dependent | rect. | 22 | 18 |
| 700 | 24.78 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 701 | 24.78 | temperature | 20 | 4320 | < th | dose independent | rect. | 3 | 23 |
| 703 | 24.78 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 23 |
| 704 | 24.78 | temperature | 25 | 4320 | < th | dose dependent | sin | 15 | NA |
| 722 | 24.79 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 5 |
| 747 | 24.79 | temperature | 25 | 4320 | < th | dose dependent | no | NA | NA |
| 805 | 24.80 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 23 |
| 806 | 24.80 | temperature | 25 | 4320 | < th | dose dependent | rect. | 3 | 23 |
| 815 | 24.81 | temperature | 20 | 1440 | < th | dose independent | rect. | 2 | 8 |
| 959 | 24.84 | temperature | 25 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 966 | 24.84 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 19 |