BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0321300 Os01g0321300|J013001N11
         (79 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G01800.2  | chr4:770926-776134 REVERSE LENGTH=1043             118   8e-28
AT1G21650.3  | chr1:7592891-7604152 REVERSE LENGTH=1806            71   9e-14

>AT4G01800.2 | chr4:770926-776134 REVERSE LENGTH=1043
          Length = 1042

 Score =  118 bits (295), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 58/59 (98%), Positives = 59/59 (100%)

Query: 1   VLNAKPENVEREAEIVAQSGRLGAVTIATNMAGRGTDIILGGNAEFMARLKLREMLMPR 59
           VLNAKPENVEREAEIVAQSGRLGAVTIATNMAGRGTDIILGGNAEFMARLKLRE+LMPR
Sbjct: 553 VLNAKPENVEREAEIVAQSGRLGAVTIATNMAGRGTDIILGGNAEFMARLKLREILMPR 611



>AT1G21650.3 | chr1:7592891-7604152 REVERSE LENGTH=1806
          Length = 1805

 Score = 71.2 bits (173), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 32/49 (65%), Positives = 41/49 (83%)

Query: 1    VLNAKPENVEREAEIVAQSGRLGAVTIATNMAGRGTDIILGGNAEFMAR 49
            VLNA+P+   REA+ +AQ+GR  A+TI+TNMAGRGTDIILGGN + +AR
Sbjct: 1274 VLNARPKYAAREADFIAQAGRKYAITISTNMAGRGTDIILGGNPKMLAR 1322



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.138    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,378,182
Number of extensions: 40851
Number of successful extensions: 103
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 2
Length of query: 79
Length of database: 11,106,569
Length adjustment: 51
Effective length of query: 28
Effective length of database: 9,708,353
Effective search space: 271833884
Effective search space used: 271833884
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 104 (44.7 bits)