BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0321300 Os01g0321300|J013001N11
         (79 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0321300  SecA protein family protein                         158   1e-39
AK110352                                                          105   7e-24
Os11g0195100  SecA protein family protein                          76   6e-15

>Os01g0321300 SecA protein family protein
          Length = 79

 Score =  158 bits (399), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 79/79 (100%), Positives = 79/79 (100%)

Query: 1  VLNAKPENVEREAEIVAQSGRLGAVTIATNMAGRGTDIILGGNAEFMARLKLREMLMPRY 60
          VLNAKPENVEREAEIVAQSGRLGAVTIATNMAGRGTDIILGGNAEFMARLKLREMLMPRY
Sbjct: 1  VLNAKPENVEREAEIVAQSGRLGAVTIATNMAGRGTDIILGGNAEFMARLKLREMLMPRY 60

Query: 61 LILLSEFQMTPDMLLLTVF 79
          LILLSEFQMTPDMLLLTVF
Sbjct: 61 LILLSEFQMTPDMLLLTVF 79



>AK110352 
          Length = 1021

 Score =  105 bits (262), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 49/58 (84%), Positives = 55/58 (94%)

Query: 1   VLNAKPENVEREAEIVAQSGRLGAVTIATNMAGRGTDIILGGNAEFMARLKLREMLMP 58
           VLNAKPENVERE+EIVAQSGR  AVTI+TNMAGRGTDI+LGGN ++MARLKLRE+LMP
Sbjct: 534 VLNAKPENVERESEIVAQSGRRSAVTISTNMAGRGTDILLGGNPDYMARLKLRELLMP 591



>Os11g0195100 SecA protein family protein
          Length = 1112

 Score = 75.9 bits (185), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 35/58 (60%), Positives = 47/58 (81%)

Query: 1   VLNAKPENVEREAEIVAQSGRLGAVTIATNMAGRGTDIILGGNAEFMARLKLREMLMP 58
           VLNA+P+   REAEIVAQ+GR  A+TI+TNMAGRGTDIILGGN + +A+  + + ++P
Sbjct: 578 VLNARPKYAAREAEIVAQAGRKHAITISTNMAGRGTDIILGGNPKMLAKEIIEDNVLP 635



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.138    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,244,070
Number of extensions: 71594
Number of successful extensions: 154
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 3
Length of query: 79
Length of database: 17,035,801
Length adjustment: 50
Effective length of query: 29
Effective length of database: 14,425,101
Effective search space: 418327929
Effective search space used: 418327929
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 149 (62.0 bits)