Os11g0195100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SecA protein family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os11g0195100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : SecA protein family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 89.1 | 0.443 | 5.97 | 0.757 | 0.193 | -0.702 | 0.551 | 2.12 | 0.38 | 14.1 | 14.4 | 4282 | -- | -- |
| 93.92 | 0.451 | 6.03 | 0.407 | 0.196 | -0.809 | 0.431 | -- | 0.335 | 14.4 | 11.9 | 10870 | -- | -- |
| 89.99 | 0.442 | 5.97 | 0.73 | 0.213 | -0.7 | -- | 1.98 | 0.38 | 14.8 | 14.05 | 4511 | -- | -- |
| 94.54 | 0.453 | 6.02 | 0.424 | 0.209 | -0.837 | -- | -- | 0.358 | 15.3 | 6.411 | 10871 | -- | -- |
| 92.37 | 0.448 | 5.97 | 0.748 | -- | -0.765 | -- | 2.02 | 0.377 | -- | 14.35 | 4078 | -- | -- |
| 105.06 | 0.481 | 6.08 | -0.101 | 0.228 | -- | 0.504 | -- | 0.0889 | 14.1 | -- | -- | -- | -- |
| 105.87 | 0.482 | 6.08 | -0.0859 | 0.238 | -- | -- | -- | 0.0925 | 15 | -- | -- | -- | -- |
| 96.93 | 0.459 | 6.02 | 0.441 | -- | -0.865 | -- | -- | 0.366 | -- | 7.168 | 11098 | -- | -- |
| 97.2 | 0.459 | 6.05 | -- | 0.22 | -0.614 | -- | -- | 0.249 | 15.1 | 8.346 | 8932 | -- | -- |
| 109.13 | 0.488 | 6.08 | -0.0961 | -- | -- | -- | -- | 0.0864 | -- | -- | -- | -- | -- |
| 106.07 | 0.482 | 6.08 | -- | 0.24 | -- | -- | -- | 0.102 | 15 | -- | -- | -- | -- |
| 98.35 | 0.462 | 6.06 | -- | -- | -0.698 | -- | -- | 0.205 | -- | 10.59 | 5467 | -- | -- |
| 109.37 | 0.488 | 6.08 | -- | -- | -- | -- | -- | 0.097 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 88.23 | temperature | 15 | 4320 | > th | dose dependent | rect. | 12 | 5 |
| 2 | 88.23 | temperature | 15 | 4320 | > th | dose dependent | rect. | 10 | 7 |
| 34 | 88.30 | temperature | 15 | 4320 | > th | dose dependent | rect. | 12 | 1 |
| 47 | 88.32 | temperature | 15 | 4320 | > th | dose dependent | rect. | 15 | 2 |
| 145 | 88.51 | temperature | 15 | 4320 | > th | dose dependent | sin | 22 | NA |
| 211 | 88.65 | temperature | 30 | 4320 | < th | dose dependent | rect. | 16 | 1 |
| 216 | 88.65 | temperature | 30 | 4320 | < th | dose dependent | rect. | 7 | 11 |
| 221 | 88.67 | wind | 9 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 225 | 88.68 | temperature | 30 | 4320 | < th | dose dependent | rect. | 15 | 3 |
| 369 | 88.82 | temperature | 30 | 4320 | < th | dose dependent | sin | 22 | NA |
| 379 | 88.83 | temperature | 30 | 4320 | < th | dose dependent | rect. | 9 | 2 |
| 392 | 88.84 | temperature | 30 | 4320 | < th | dose dependent | rect. | 8 | 5 |
| 754 | 89.12 | humidity | 80 | 43200 | > th | dose independent | rect. | 23 | 2 |
| 774 | 89.13 | temperature | 15 | 4320 | > th | dose dependent | no | NA | NA |
| 806 | 89.15 | humidity | 80 | 43200 | > th | dose independent | rect. | 22 | 4 |
| 862 | 89.18 | temperature | 15 | 4320 | > th | dose dependent | rect. | 12 | 23 |
| 902 | 89.20 | temperature | 15 | 4320 | > th | dose dependent | rect. | 15 | 23 |