BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0180200 Os11g0180200|J090097B08
         (72 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0180200  Similar to Protein tyrosine phosphatase 1           151   9e-38
Os12g0174800  Tyrosine specific protein phosphatase domain c...   102   8e-23

>Os11g0180200 Similar to Protein tyrosine phosphatase 1
          Length = 72

 Score =  151 bits (382), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 72/72 (100%), Positives = 72/72 (100%)

Query: 1  MSAGIGRTGAYITIHNTIERILLGDMSALDLSKTVKKFRSQRPGMVQTEDQYKFCYMAIV 60
          MSAGIGRTGAYITIHNTIERILLGDMSALDLSKTVKKFRSQRPGMVQTEDQYKFCYMAIV
Sbjct: 1  MSAGIGRTGAYITIHNTIERILLGDMSALDLSKTVKKFRSQRPGMVQTEDQYKFCYMAIV 60

Query: 61 SELNDLLSNSKH 72
          SELNDLLSNSKH
Sbjct: 61 SELNDLLSNSKH 72



>Os12g0174800 Tyrosine specific protein phosphatase domain containing protein
          Length = 328

 Score =  102 bits (253), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 48/70 (68%), Positives = 56/70 (80%)

Query: 2   SAGIGRTGAYITIHNTIERILLGDMSALDLSKTVKKFRSQRPGMVQTEDQYKFCYMAIVS 61
           SAGIGRTGAYITIH+TIER+LLGD S+  L +TVK  R+QR GMVQTE QY FCY AI  
Sbjct: 259 SAGIGRTGAYITIHSTIERLLLGDKSSYHLDETVKTLRTQRVGMVQTEKQYMFCYRAIAD 318

Query: 62  ELNDLLSNSK 71
           EL DLL +++
Sbjct: 319 ELKDLLESNR 328



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.133    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,848,446
Number of extensions: 47209
Number of successful extensions: 72
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 2
Length of query: 72
Length of database: 17,035,801
Length adjustment: 43
Effective length of query: 29
Effective length of database: 14,790,599
Effective search space: 428927371
Effective search space used: 428927371
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)