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Os11g0180200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Protein tyrosine phosphatase 1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.3 (0.0213) R2 : 0.263
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.633 (0.0528) R2dC : 0.233 R2C : 0.229
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.18 (0.0448) R2dN8 : 0.0338 R2N8 : 0.03
σ : 0.401
deviance : 73.57
__
_____
C
peak time of C : 2.81
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
55.02 0.349 11.3 -0.634 0.531 0.464 0.997 -1.31 0.185 2.26 91.44 250 -- --
56.66 0.351 11.3 -0.644 0.532 0.639 0.754 -- 0.176 2.1 93.89 197 -- --
57.84 0.354 11.3 -0.681 0.52 0.604 -- -0.835 0.185 2.15 92.86 238 -- --
58.48 0.356 11.3 -0.687 0.536 0.638 -- -- 0.161 2.18 93.74 196 -- --
61.1 0.366 11.3 -0.662 -- 0.628 -- 0.238 0.17 -- 69.04 53 -- --
60.1 0.363 11.4 -0.637 0.642 -- 0.781 -- 0.112 2.7 -- -- -- --
62.21 0.369 11.4 -0.656 0.646 -- -- -- 0.107 2.82 -- -- -- --
61.31 0.366 11.3 -0.653 -- 0.636 -- -- 0.173 -- 69.04 53 -- --
70.87 0.392 11.3 -- 0.537 0.651 -- -- 0.203 2.11 94.01 199 -- --
86.39 0.434 11.4 -0.629 -- -- -- -- 0.124 -- -- -- -- --
73.57 0.401 11.3 -- 0.633 -- -- -- 0.18 2.81 -- -- -- --
72.48 0.397 11.3 -- -- 0.633 -- -- 0.24 -- 68 9 -- --
96.82 0.459 11.3 -- -- -- -- -- 0.193 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 51.13 temperature 25 90 < th dose independent rect. 4 17
11 51.49 temperature 30 30 < th dose dependent rect. 4 19
38 52.78 temperature 30 30 < th dose dependent rect. 4 14
42 52.81 temperature 25 270 < th dose independent rect. 1 18
48 52.91 temperature 25 30 > th dose independent rect. 8 12
66 53.19 temperature 10 10 > th dose dependent rect. 8 20
73 53.31 temperature 25 30 > th dose independent rect. 8 10
84 53.43 temperature 30 30 < th dose dependent rect. 2 21
86 53.48 temperature 15 10 > th dose dependent rect. 8 12
89 53.50 wind 5 90 < th dose independent rect. 8 20
102 53.60 temperature 25 30 < th dose independent sin 23 NA
112 53.65 temperature 30 10 < th dose dependent rect. 11 12
121 53.73 temperature 25 30 > th dose independent sin 23 NA
124 53.76 humidity 50 10 > th dose dependent rect. 4 19
131 53.79 temperature 30 90 < th dose dependent rect. 11 10
151 53.89 humidity 70 10 > th dose dependent rect. 4 19
159 53.95 wind 9 270 < th dose dependent rect. 6 20
174 54.00 humidity 50 270 > th dose independent rect. 15 15
177 54.01 wind 5 270 < th dose independent rect. 6 11
191 54.06 wind 3 43200 < th dose dependent rect. 4 1
195 54.08 wind 9 270 < th dose dependent rect. 6 11
208 54.14 temperature 10 270 > th dose dependent rect. 6 19
211 54.15 temperature 25 10 < th dose dependent sin 22 NA
236 54.27 humidity 50 270 > th dose independent rect. 1 20
256 54.33 atmosphere 1005 30 > th dose independent rect. 23 5
265 54.35 humidity 50 30 > th dose independent rect. 4 19
266 54.35 temperature 25 90 > th dose independent rect. 23 20
269 54.37 radiation 20 270 < th dose dependent rect. 16 14
273 54.38 radiation 10 270 < th dose independent rect. 16 14
286 54.43 temperature 25 90 < th dose independent rect. 11 10
288 54.43 temperature 25 10 < th dose dependent rect. 8 14
299 54.45 temperature 30 90 < th dose dependent rect. 13 8
301 54.46 wind 5 90 < th dose independent rect. 8 9
314 54.48 temperature 25 10 < th dose dependent rect. 8 12
333 54.54 radiation 40 4320 < th dose dependent rect. 24 5
346 54.56 humidity 50 270 > th dose independent rect. 11 10
355 54.57 radiation 1 270 < th dose dependent sin 1 NA
368 54.59 temperature 25 14400 > th dose dependent rect. 2 1
374 54.60 temperature 25 14400 > th dose dependent rect. 1 3
407 54.65 temperature 25 90 < th dose independent rect. 11 8
419 54.66 temperature 25 14400 > th dose dependent rect. 24 6
422 54.66 radiation 1 270 < th dose dependent rect. 1 20
438 54.69 radiation 10 1440 < th dose independent rect. 24 5
441 54.69 wind 9 270 < th dose dependent rect. 13 12
453 54.71 radiation 1 270 < th dose independent rect. 1 20
465 54.73 temperature 25 14400 > th dose independent rect. 2 1
505 54.78 wind 9 43200 > th dose independent rect. 18 2
517 54.79 wind 9 43200 > th dose dependent rect. 18 2
526 54.80 wind 3 14400 > th dose dependent rect. 16 3
537 54.81 radiation 1 270 < th dose dependent rect. 3 16
594 54.88 temperature 10 270 > th dose dependent rect. 6 10
599 54.89 radiation 1 1440 > th dose independent rect. 11 1
600 54.89 temperature 25 14400 < th dose independent rect. 3 2
604 54.89 wind 5 270 < th dose independent rect. 21 14
619 54.90 radiation 10 90 < th dose dependent rect. 4 19
621 54.91 temperature 30 270 < th dose independent rect. 15 15
635 54.92 wind 1 1440 < th dose dependent rect. 6 1
659 54.95 radiation 1 270 < th dose independent rect. 2 17
671 54.96 wind 1 43200 < th dose dependent rect. 1 4
678 54.97 wind 5 43200 < th dose dependent rect. 2 1
685 54.97 humidity 50 270 > th dose dependent rect. 16 14
687 54.97 humidity 90 270 > th dose dependent rect. 10 20
690 54.98 humidity 50 10 > th dose dependent rect. 12 11
698 54.99 wind 5 90 < th dose independent rect. 23 18
706 55.00 atmosphere 1005 270 > th dose independent rect. 23 1
719 55.01 temperature 25 14400 < th dose independent rect. 5 1
723 55.01 temperature 25 90 > th dose independent rect. 4 15
725 55.01 humidity 80 30 > th dose independent rect. 4 19
730 55.01 humidity 90 270 > th dose dependent rect. 18 12
736 55.02 temperature 25 14400 > th dose independent rect. 5 1
737 55.02 wind 9 43200 < th dose independent rect. 18 2
741 55.02 radiation 1 270 > th dose independent rect. 6 11
742 55.02 radiation 20 270 < th dose independent rect. 13 17
749 55.02 humidity 90 270 > th dose dependent rect. 20 10
758 55.03 temperature 30 14400 < th dose independent rect. 12 1
769 55.03 wind 9 90 < th dose dependent rect. 8 11
771 55.04 temperature 30 14400 > th dose independent rect. 12 1
776 55.04 wind 9 90 < th dose dependent rect. 8 9
804 55.06 wind 3 14400 > th dose dependent rect. 14 5
812 55.07 radiation 1 270 > th dose independent sin 1 NA
829 55.09 radiation 1 1440 > th dose independent rect. 9 3
835 55.09 humidity 70 10 > th dose independent rect. 16 16
846 55.10 humidity 90 270 > th dose dependent sin 11 NA
856 55.11 temperature 30 14400 < th dose independent rect. 17 1
872 55.12 wind 5 30 < th dose independent rect. 23 5
904 55.15 radiation 1 270 < th dose independent sin 1 NA
905 55.15 radiation 40 1440 > th dose independent rect. 8 1
935 55.16 temperature 30 14400 > th dose independent rect. 17 1
958 55.17 wind 7 43200 < th dose dependent rect. 1 4
995 55.20 wind 5 270 < th dose independent rect. 13 12